Massachusetts General Hospital, Center for Morphometric Analysis
Internet Brain Segmentation Repository

Publications using IBSR Data

2009

Chao, W. H., Y. Y. Chen, et al. (2009). "Automatic segmentation of magnetic resonance images using a decision tree with spatial information." Comput Med Imaging Graph 33(2): 111-21.

2008

Zhao, Z. and E. K. Teoh (2008). "A new scheme for automated 3D PDM construction using deformable models." Image Vision Comput. 26(2): 275-288.

Van Leemput, K. (2008). "Encoding Probabilistic Brain Atlases Using Bayesian Inference." IEEE Trans Med Imaging.

Sdika, M. (2008). "A fast nonrigid image registration with constraints on the Jacobian using large scale constrained optimization." IEEE Trans Med Imaging 27(2): 271-81.

Liu, J., H. Su, et al. (2008). "A hybrid approach for segmentation of anatomic structures in medical images." International Journal of Computer Assisted Radiology and Surgery 3: 213-219.

Liao, S. and A. C. Chung (2008). "Non-rigid image registration with SalphaS filters." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 11(Pt 2): 888-96.

Hernandez, M., S. Olmos, et al. (2008). Comparing algorithms for diffeomorphic registration: Stationary LDDMM and Diffeomorphic Demons. International Workshop on the Mathematical Foundations of Computational Anatomy.

Heckemann, R., A. Hammers, et al. (2008). "Automatic volumetry on MR brain images can support diagnostic decision making." BMC Medical Imaging 8(1): 9.

Hasanzadeh , M. and S. Kasaei (2008). "Fuzzy Image Segmentation Using Membership Connectedness." EURASIP Journal on Advances in Signal Processing 2008.

Hamarneh, G., P. Jassi, et al. (2008). "Simulation of ground-truth validation data via physically- and statistically-based warps." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 11(Pt 1): 459-67.

Cunneen, S. A. (2008). "Review of meta-analytic comparisons of bariatric surgery with a focus on laparoscopic adjustable gastric banding." Surg Obes Relat Dis 4(3 Suppl): S47-55.

Chiverton, J. P. and K. Wells (2008). "Adaptive partial volume classification of MRI data." Physics in Medicine and Biology(20): 5577.

Chang, H. H. and D. J. Valentino (2008). "An electrostatic deformable model for medical image segmentation." Comput Med Imaging Graph 32(1): 22-35.

2007

Zhou, Y. and J. Bai (2007). "Atlas-based fuzzy connectedness segmentation and intensity nonuniformity correction applied to brain MRI." IEEE Trans Biomed Eng 54(1): 122-9.

Yang, L., T. Tiow-Seng, et al. (2007). Model-Guided Segmentation of 3D Neuroradiological Image Using Statistical Surface Wavelet Model. Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on.

Peng, X., W. Chen, et al. (2007). "Feature-based nonrigid image registration using a Hausdorff distance matching measure." Optical Engineering 46(5): 057201-16.

Melonakos, J., Y. Gao, et al. (2007). Tissue Tracking: Applications for Brain MRI Classification. SPIE Medical Imaging.

HU, Q., G. QIAN, et al. (2007). METHODS, APPARATUS AND COMPUTER-READABLE MEDIA FOR IMAGE SEGMENTATION. W. I. P. Organization.

Gouttard, S., M. Styner, et al. (2007). Subcortical structure segmentation using probabilistic atlas priors. Medical Imaging 2007: Image Processing, San Diego, CA, USA, SPIE.

Gouttard, S., M. Styner, et al. (2007). Subcortical Structure Segmentation using Probabilistic Atlas Priors. SBIE Medical Imaging.

GOMORI, M., John, M. GALUN, et al. (2007). AN INTEGRATED SEGMENTATION AND CLASSIFICATION APPROACH APPLIED TO MEDICAL APPLICATIONS ANALYSIS. WIPO.

García-Sebastián , M., E. Fernández, et al. (2007). "A parametric gradient descent MRI intensity inhomogeneity correction algorithm." Pattern Recogn. Lett. 28(13): 1657-1666.

Chuang, C.-H., P. E. Cheng, et al. (2007). "Application of self-organizing map (SOM) for cerebral cortex reconstruction." International Journal of Computational Intelligence Research 3(1).

Bazin, P. L. and D. L. Pham (2007). "Statistical and topological atlas based brain image segmentation." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 10(Pt 1): 94-101.

Archip, N., F. A. Jolesz, et al. (2007). "A validation framework for brain tumor segmentation." Acad Radiol 14(10): 1242-51.

Akselrod-Ballin, A., M. Galun, et al. (2007). "Prior knowledge driven multiscale segmentation of brain MRI." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 10(Pt 2): 118-26.

2006

Zhuang, A. H., D. J. Valentino, et al. (2006). "Skull-stripping magnetic resonance brain images using a model-based level set." Neuroimage.

Van Leemput, K. (2006). "Probabilistic brain atlas encoding using Bayesian inference." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 9(Pt 1): 704-11.

Qingmao, H., Q. Guoyu, et al. (2006). Fast and Robust Segmentation of Head in T1-weighted Magnetic Resonance Volumes. Control, Automation, Robotics and Vision. ICARCV '06. 9th International Conference on.

Peng , Z. (2006). Segmentation of White Matter, Gray Matter, and CSF from MR Brain Images and Extraction of Vertebrae from MR Spinal Images. Department of Electrical and Computer Engineering. Cincinnati OH, University of Cincinnati. DOCTORATE OF PHILOSOPHY.

Nowinski, W. L., G. Qian, et al. (2006). "Fast Talairach Transformation for magnetic resonance neuroimages." J Comput Assist Tomogr 30(4): 629-41.

Mikhail V. Milchenko, O. S. P., John M. Tyler, (2006). "The fast automatic algorithm for correction of MR bias field." Journal of Magnetic Resonance Imaging 24(4): 891-900.

Kahn, E. G. (2006). Computational Strategies for Meshfree Nonrigid Registration, Yale University. Doctor of Philosophy.

Ibrahima, M., N. Johna, et al. (2006). "Hidden Markov models-based 3D MRI brain segmentation." Image and Vision Computing 24(10): 1065-1079.

Guo, Y. (2006). MEDICAL IMAGE REGISTRATION AND APPLICATION TO ATLAS-BASED SEGMENTATION, Kent State University. Doctor of Philosophy.

Crum, W. R., O. Camara, et al. (2006). "Generalized overlap measures for evaluation and validation in medical image analysis." IEEE Trans Med Imaging 25(11): 1451-61.

Cleator, I. G., C. L. Birmingham, et al. (2006). "Long-term effect of ileogastrostomy surgery for morbid obesity on diabetes mellitus and sleep apnea." Obes Surg 16(10): 1337-41.

Bossa, M. ı. N. and S. Olmos (2006). Statistical model of similarity transformations: building a multi-object pose model of brain structures. MMBIA 2006: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, New York, NY, USA.

Akselrod-Ballin, A., M. Galun, et al. (2006). "Atlas guided identification of brain structures by combining 3D segmentation and SVM classification." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 9(Pt 2): 209-16.

Akselrod-Ballin, A., M. Galun, et al. (2006). Atlas Guided Identification of Brain Structures by Combining 3D Segmentation and SVM. MICCAI.

2005

Zhou, J. and J. C. Rajapakse (2005). "Subcortical structure segmentation using fuzzy templates." Neuroimage: (In press).

Zhao, Z. and E. K. Teoh (2005). A novel framework for automated 3D PDM construction using deformable models. Medical Imaging 2005: Image Processing, San Diego, CA, USA, SPIE.

Zhao, Z., S. Aylward, et al. (2005). A Novel 3D Partitioned Active Shape Model for Segmentation of Brain MR images. Medical Image Computing and Computer-Assisted Intervention, Springer-Verlag.

Zhang, W., E. E. Mason, et al. (2005). "Factors influencing survival following surgical treatment of obesity." Obes Surg 15(1): 43-50.

Wu, J. and a. C. S. Chung (2005). Cross Entropy: A New Solver for Markov Random Field Modeling and Applications to Medical Image Segmentation. The Eighth International Conference on Medical Image Computing and Computer-Assisted Intervention, Palm Springs, California.

Spence, K. V. N. (2005). AUTOMATIC SEGMENTATION OF MAGNETIC RESONANCE IMAGES OF THE BRAIN. Department of Computer Science, Louisiana State University. Doctor of Philosophy.

Solomon, J., J. A. Butman, et al. (2005). Segmentation of Objects in Temporal Images Using the Hidden Markov Model. Proceedings of the IEEE International Conference on Image Processing 2005.

Shen, S., W. Sandham, et al. (2005). "MRI Fuzzy Segmentation of Brain Tissue Using Neighborhood Attraction With Neural-Network Optimization." Information Technology in Biomedicine, IEEE Transactions on 9(3): 459-467.

Roy, S. (2005). A Study on Data Mining Techniques and its Application in Medical Imagery. Assam, INDIA, Tezpur University.

Rohlfing, T. and C. R. Maurer, Jr. (2005). "Shape-based averaging for combination of multiple segmentations." Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 8(Pt 2): 838-45.

Rohlfing, T. and C. R. Maurer (2005). "Multi-classifier framework for atlas-based image segmentation." Pattern Recognition Letters 26(13): 2070-2079.

Rohlfing, T. and C. R. Maurer (2005). Shape-based averaging for combination of multiple segmentations. Medical Image Computing and Computer-Assisted Intervention, Palm Springs, CA, Springer-Verlag.

Prastawa, M., J. H. Gilmore, et al. (2005). "Automatic segmentation of MR images of the developing newborn brain." Med Image Anal 9(5): 457-66.

Mykkanen, J., J. Tohka, et al. (2005). "Automatic extraction of brain surface and mid-sagittal plane from PET images applying deformable models." Comput Methods Programs Biomed 79(1): 1-17.

Montgomery, D. and A. Amira (2005). Automated Multiscale Segmentation of Oncological Cerebral MR Image Volumes. International Computer Systems & Information Technology Conference, Algiers, Algeria.

Litvin, A. and W. C. Karl (2005). Coupled shape distribution-based segmentation of multiple objects. Proceedings of Information Processing in Medical Imaging, Glenwood Springs, Colorado.

Joshi, N. B. and M. Brady (2005). A non-parametric mixture model for partial volume segmentation of MR images. Proceedings of British Machine Vision Conference - BMVC.

Huiguang, H., J. Tian, et al. (2005). A New Interactive Segmentation Scheme Based on Fuzzy Affinity and Live-Wire. Fuzzy Systems and Knowledge Discovery, Changsha, China, Springer.

Gudla, P. R. (2005). Texture-based segmentation and finite element mesh generation for heterogeneous biological image data. Biological Resources Engineering, University of Maryland at College Park.

Fennema-Notestine, C., I. B. Ozyurt, et al. (2005). "Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location." Hum Brain Mapp.

Ciofolo, C. and C. Barillot (2005). Brain Segmentation with Competitive Level Sets and Fuzzy Control. Proceedings of Information Processing in Medical Imaging, Glenwood Springs, Colorado.

2004

Zeydabadinezhad, M., H. Soltanian-Zadeh, et al. (2004). Brain MR image segmentation by Gaussian mixture modeling. Proceedings of IEEE 2nd GCC Conference & Exhibition.

Zeydabadi-nejad, M., R. A. Zoroofi, et al. (2004). "Comparison of the three Guassian mixture modeling and spatial encoding methods for segmenting human brain MRI." WSEAS Trans. On Electronics 1(3): 482-487.

Zeydabadi, M., R. A. Zoroofi, et al. (2004). Improving the automatic PC based segmentation of MR brain images with the Wavelet transform and EM algorithm. Proceedings of 9th annual computer society of Iran computer conference.

Zeydabadi, M., R. A. Zoroofi, et al. (2004). Automatic segmentation of brain tissues from MR brain images with Wavelet transform and the EM algorithm. Proceedings of 11th Iranian Conference on Biomedical Engineering (ICBME2004).

Zeydabadi, M., R. A. Zoroofi, et al. (2004). Multiresolution automatic segmentation of T1-weighted brain MR images. Biomedical Imaging: Macro to Nano, 2004. IEEE International Symposium on.

Tohka, J., A. Zijdenbos, et al. (2004). "Fast and robust parameter estimation for statistical partial volume models in brain MRI." Neuroimage 23(1): 84-97.

Tang, S. and T. Jiang (2004). Fast nonrigid medical image registration by fluid model. 6th Asia Conference on Computer Vision, Jeju, Korea.

Tang, S. and T. Jiang (2004). "Nonrigid registration of medical image by linear singular blending techniques." Pattern Recognition Letters 25(4): 399.

Songyuan, T. and J. Tianzi (2004). Nonrigid registration of medical image by maxwell model of viscoelasticity. Biomedical Imaging: Macro to Nano, 2004. IEEE International Symposium on.

Qingmao, H. and W. L. Nowinski (2004). Knowledge-driven extraction of the four modified Talairach cortical landmarks (A, P, L, and R) from MR neuroimages. Bioinformatics and Bioengineering, 2004. BIBE 2004. Proceedings. Fourth IEEE Symposium on.

Prastawa, M., J. Gilmore, et al. (2004). Automatic Segmentation of Neonatal Brain MRI. Medical Image Computing and Computer Assisted Intervention.

Pham, D. L. and J. L. Prince (2004). Robust unsupervised tissue classification in MR images. Biomedical Imaging: Macro to Nano, 2004. IEEE International Symposium on.

Karimi, M. M., N. Batmanghelich, et al. (2004). A 3-D deformable surface method for automatic hippocampus-amygdala complex segmentation. Nuclear Science Symposium Conference Record, 2004 IEEE.

Chiverton, J., K. Wells, et al. (2004). A Partial Volume 3-D Gradient Magnitude Model. Conference Proceedings in Medical Image Understanding and Analysis (MIUA), Imperial College, London, UK, BMVA Press.

2003

Zhuge, Y., J. Liu, et al. (2003). Membership-based multiprotocol MR brain image segmentation. Medical Imaging 2003: Image Processing, San Diego, CA, USA, SPIE.

Yoon, U., J.-M. Lee, et al. (2003). A Comparison of Automated and Semi-automated Skull-stripping Algorithms: Simulated Phantom and Real Data In. Human Brain Mapping, New York, NY.

Rohlfing, T., D. B. Russakoff, et al. (2003). Extraction and Application of Expert Priors to Combine Multiple Segmentations of Human Brain Tissue. Medical Image Computing and Computer-Assisted Intervention.

Morra, L., F. Lamberti, et al. (2003). A neural network approach to unsupervised segmentation of single-channel MR images. Neural Engineering, 2003. Conference Proceedings. First International IEEE EMBS Conference on.

John, N. M., M. R. Kabuka, et al. (2003). "Multivariate statistical model for 3D image segmentation with application to medical images." J Digit Imaging 16(4): 365-77.

Hartkens, T., D. L. Hill, et al. (2003). "Measurement and analysis of brain deformation during neurosurgery." IEEE Trans Med Imaging 22(1): 82-92.

Dam, E. (2003). Committing Medical Image Analysis, The IT University of Copenhagen.

Burkhardt, J. (2003). A Markov Chain Monte Carlo Algorithm for the Segmentation of T1-MR-Images of the Head. Fakultaet fuer Mathematik, Technische Universitaet Muenchen.

2002

Suri, J. S., S. Singh, et al. (2002). "Fusion of Region and Boundary/Surface -Based Computer Vision and Pattern Recognition: Techniques for 2-D and 3-D MR Cerebral Cortical Segmentation (Part-II) A State-of-the-Art Review." Pattern Analys is & Applications 5(1): 77 - 98.

Shan, Z. Y., G. H. Yue, et al. (2002). "Automated histogram-based brain segmentation in T1-weighted three-dimensional magnetic resonance head images." Neuroimage 17(3): 1587-98.

Pommert, A. and K. Heinz Hoehne (2002). Evaluation of Image Quality in Medical Volume Visualization: The State of the Art. Proceedings of the 5th International Conference on Medical Image Computing and Computer-Assisted Intervention-Part II. Tokyo, Japan, Springer-Verlag: 598-605.

Nielsen, C. F. and P. J. Passmore (2002). Robust semi-automatic segmentation of single- and multichannel MRI volumes through adaptable class-specific representation. Medical Imaging 2002: Image Processing, San Diego, CA, USA, SPIE.

Mason, E. E. and K. E. Renquist (2002). "Gallbladder management in obesity surgery." Obes Surg 12(2): 222-9.

Jasit, S. S., S. Sameer, et al. (2002). A note on future research in segmentation techniques applied to neurology, cardiology, mammography and pathology. Advanced algorithmic approaches to medical image segmentation: state-of-the-art application in cardiology, neurology, mammography and pathology, Springer-Verlag New York, Inc.: 559-572.

Brinkley, J. and C. Rosse (2002). "Imaging Informatics and the Human Brain Project: the Role of Structure." Methods of Information in Medicine 41(2): 131--148.

Atkins, M. S., K. Siu, et al. (2002). Difficulties of T1 brain MRI segmentation techniques. Medical Imaging 2002: Image Processing, San Diego, CA, USA, SPIE.

2001

Zhang, Y., M. Brady, et al. (2001). "Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm." Medical Imaging, IEEE Transactions on 20(1): 45-57.

Shattuck, D. W., S. R. Sandor-Leahy, et al. (2001). "Magnetic resonance image tissue classification using a partial volume model." Neuroimage 13(5): 856-76.

Lin, Y., J. Tian, et al. (2001). "Image segmentation via fuzzy object extraction and edge detection and its medical application." Journal of X-Ray Science and Technology Special Issue on Clinical Applications of Modern Imaging 10(1-2): 95-106.

Likar, B., M. A. Viergever, et al. (2001). "Retrospective correction of MR intensity inhomogeneity by information minimization." IEEE Trans Med Imaging 20(12): 1398-410.

Chalana, V., L. Ng, et al. (2001). Validation of brain segmentation and tissue classification algorithm for T1-weighted MR images. Medical Imaging 2001: Image Processing.

2000

Likar, B., J. B. Maintz, et al. (2000). "Retrospective shading correction based on entropy minimization." J Microsc 197 ( Pt 3): 285-95.

Likar, B. (2000). Registration and Restoration of Medical Images. Ljubljana, Slovenia, University of Ljubljan, Faculty of Electrical Engineering.

Kaufhold, J. P. (2000). Energy Formulations of Medical Image Segmentations. Boston, MA, Boston University College of Engineering, Department of Biomedical Engineering.

Erik, D. and N. Mads (2000). Non-linear Diffusion for Interactive Multi-scale Watershed Segmentation. Proceedings of the Third International Conference on Medical Image Computing and Computer-Assisted Intervention %@ 3-540-41189-5, Springer-Verlag: 216-225.

Duncan, J. S. and N. Ayache (2000). "Medical image analysis: progress over two decades and the challenges ahead." Pattern Analysis and Machine Intelligence, IEEE Transactions on 22(1): 85-106.

1999

Xiaolan, Z., L. H. Staib, et al. (1999). "Segmentation and measurement of the cortex from 3-D MR images using coupled-surfaces propagation." Medical Imaging, IEEE Transactions on 18(10): 927-937.

Frederik, M., L. Koen Van, et al. (1999). Quantification of Cerebral Grey and White Matter Asymmetry from MRI. Proceedings of the Second International Conference on Medical Image Computing and Computer-Assisted Intervention, Springer-Verlag.

1998

Rajapakse, J. C. and F. Kruggel (1998). "Segmentation of MR images with intensity inhomogeneities." Image And Vision Computing 16(3): 165-180.

Feng, M., W. Wenping, et al. (1998). Probabilistic segmentation of volume data for visualization using SOM-PNN classifier. Volume Visualization, 1998. IEEE Symposium on.

1997

Mason, E. E., S. Tang, et al. (1997). "A decade of change in obesity surgery. National Bariatric Surgery Registry (NBSR) Contributors." Obes Surg 7(3): 189-97.


Go to [IBSR Main Page]. Questions about this page should be directed to Andy.