NITRC The Neuro Bureau Forum: open-discussion

RE: NEURO-BUREAU: ADHD-200 Processed Data Release

shams mohamed — Tue, 19 Aug 2025 6:55:46 GMT

Originally posted by Cameron Craddock:
<blockquote>In order to bring the ADHD-200 Global Competition to a wider audience, The Neuro Bureau is making preprocessed versions of the competition data freely available to the general public (neurobureau.projects.nitrc.org/ADHD200). These openly downloadable datasets include both preprocessed versions of structural and functional dataset previously made available by the ADHD-200 consortium, as well as initial standard subject-level analyses (e.g., fractional amplitude of low frequency fluctuations, connectivity maps for 10 commonly observed resting state networks (Smith et al. PNAS 2009)). We hope this release will open collaborative possibilities and contributions from researchers not traditionally addressing brain data -- for those whose specialties lay outside of MRI and fMRI data processing, the competition is now one step easier.  The preprocessing pipelines will include: 1) The Athena: resting state fMRI and voxel-based morphometry preprocessing (grey matter) using AFNI and FSL [released] 2) The Burner: voxel-based morphometry processing (grey matter and white matter) using  DARTEL in SPM [coming soon] 3) The NIAK: resting state fMRI preprocessing using the NeuroImaging Analysis Kit on CBRAIN [coming soon] 4) The CIVET: cortical thickness measures extracted using the CIVET pipeline on CBRAIN [coming soon] Additionally, for May 1, we anticipate the release of extracted timeseries data (in .csv format) and corresponding full- and partial-correlation matrices for a variety of brain parcellation schemes.  For more information and to download data please visit: neurobureau.projects.nitrc.org/ADHD200. A NITRC account is required to download data. Cheers, Cameron Craddock, Daniel Margulies, and The Neuro Bureau</blockquote>

ADHD-200 Preprocessed Dataset

Naseer Khan — Thu, 09 Jul 2020 4:53:08 GMT

I hope all are fine and well, can somebody please share with me the preprocessed ADHD-200 fMRI dataset with training and testing sites information, I have downloaded the dataset in AAL format and also the complete dataset,it has training and testing folders but the DX column in the testing sites is "withheld", can somebody share me the ADHD-100 dataset with training and testing data also that people are using these papers. I have even emailed many authors but all say go to sites and download, also my dataset does not match with that of the papers, for example in some subjects there are zero column so should that subject be disacarded , because if discarded then my dataset does not match with that of various up to dates paper.

Can somebody help me?

Regards

naseerkhan861@hotmail.com

Extract ROIs from ReHo .nii files

Pratyush Priyadarshi — Mon, 22 Apr 2019 12:08:30 GMT

Hi All,

I working on a project which requires me to extract regions of interests from the ReHo mapping which is in .nii file.
Please help me with the same as I am an undergrad student and that too from Computer Science background so its very difficult for me to even search for relevant articles explaining the process as many of the terms are beyond my current knowledge. I just need the pathway pointing in the right direction for my work.
Any help is highly appreciated.

Thanks in advance.

Regards,
Pratyush

Public release of preprocessed DTI data

Cameron Craddock — Tue, 18 Oct 2011 3:06:39 GMT

Thanks to the efforts of András Jakab (ETH Zurich and U. Debrecen, Hungary), The Neuro Bureau is pleased to announce the first of many public releases of preprocessed DTI data. This release contains DTI scalars and probabilistic tractography of all 180 subjects from the Beijing Enhanced sample that has been made publicly available on INDI thanks to the generosity of Yufeng Zang (Beijing Normal University). The data can be downloaded from (http://www.nitrc.org/frs/?group_id=383), please refer to (http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:INDIpreproc) for details on the organization of the files and the preprocessing pipeline employed.

Owing to the success of the ADHD-200 preprocessed data release (~5400 downloads to date), The Neuro Bureau is planning the systematic public release of preprocessed forms of all of the INDI data. Stay tuned to neurobureau.org for future data releases, as well as opportunities to participate in open neuroscience.

Cheers,
Cameron Craddock

* FOR HBM: An Event You Don't Want to Miss *

Cameron Craddock — Tue, 21 Jun 2011 13:45:53 GMT

Dear all,

I am writing to draw your attention to a social event that will be held at the OHBM conference in Quebec City on Tuesday, June 28th, from 8PM to 3AM:

THE CIRQUE DU CERVEAU GALA

Co-organized by Daniel Margulies, Cameron Craddock, Pierre Bellec and the Neuro Bureau, and powered by the Child Mind Institute, this year’s event will celebrate the artistic creativity of the neuroscientific community. Located at the Musée National des Beaux-Arts du Québec (http://neurobureau.projects.nitrc.org/BrainArt/Awards_Venue.html), the gala will feature the 2011 Brain Art Competition award ceremony (http://neurobureau.projects.nitrc.org/BrainArt/Competition.html), followed by a DJ and celebrations. If you missed out on the art competition – no worries, there will be a door competition for the best hand-drawing of the brain (materials for drawing will be provided; entries are to be drawn at the event, not prior).

Built with the same spirit of community and open neuroscience as the 2010 “Young & Restless Beachside Gala” in Barcelona, this event will once again be open to all. And, your first drink will be free!

Gala Schedule:

8PM: Doors open and hors d'oeuvres served
9PM: Brain Art Competition Awards ceremony
* DJ will follow the award ceremony and continue until the end of the night *

The venue is a 20-minute walk from the conference center. See our flyer for more details (http://neurobureau.projects.nitrc.org/Cirque_du_Cerveau_flyer.pdf a hard-copy will be provided at the conference). If you got 3D glasses, you may want to put them on to see an additional dimension emerge from the flyer. If not, no worries – we’ll provide you with a pair at the conference. This is a non-profit event, powered by the Child Mind Institute (www.childmind.org) with additional support from the Max Planck Institute for Human Cognitive and Brain Sciences, Montreal Neurological Institute, Unité de neuroimagerie fonctionnelle, Centre de recherche de l'institut universitaire de gériatrie de Montréal, the 1000 Functional Connectomes Project, and the International Neuroimaging Data-Sharing Initiative (INDI).

Best,
Mike

art@HBM: Introducing Nathalie Regard

Pierre Bellec — Tue, 14 Jun 2011 15:53:42 GMT

A new article has been posted on the neurobureau blog:
[url=http://theneurobureau.wordpress.com/]http://theneurobureau.wordpress.com/[/url]

It is the latest of a series of short articles presenting the artists and works involved in the art exhibition that will take place during the human brain mapping conference in Québec City, June 26th-30th.

Stay tuned !

Pierre Bellec & The Neurobureau

NEURO-BUREAU is handing out 3d glasses at HBM

Cameron Craddock — Mon, 13 Jun 2011 20:31:39 GMT

The Neuro Bureau would like to announce a new initiative to encourage the use of 3D stereoscopic images for visualizing functional and structural neuroimages. In support of this initiative, the Neuro Bureau will be distributing red/cyan (anaglyph) 3D glasses at the 2011 meeting of the Organization for Human Brain Mapping. We are encouraging all HBM participants who have a talk or poster at the meeting to add a stereoscopic image to their presentations.

Dr. Gonzalo Rojas, the leader of this initiative, has written a tutorial on how to create these images using 3D Slicer ([url=../plugins/mwiki/index.php/neurobureau:StereoImages]http://www.nitrc.org/plugins/mwiki/index.php/neurobureau:StereoImages[/url]). If you add a stereoscopic image to your presentation/poster please tell us about it on the stereoscopic image forum (http://www.nitrc.org/forum/forum.php?forum_id=2118), so that we can come by and see your images!

NEURO-BUREAU: ADHD-200 Processed Data Release

Cameron Craddock — Sun, 17 Apr 2011 22:50:20 GMT

In order to bring the ADHD-200 Global Competition to a wider audience, The Neuro Bureau is making preprocessed versions of the competition data freely available to the general public (neurobureau.projects.nitrc.org/ADHD200). These openly downloadable datasets include both preprocessed versions of structural and functional dataset previously made available by the ADHD-200 consortium, as well as initial standard subject-level analyses (e.g., fractional amplitude of low frequency fluctuations, connectivity maps for 10 commonly observed resting state networks (Smith et al. PNAS 2009)). We hope this release will open collaborative possibilities and contributions from researchers not traditionally addressing brain data -- for those whose specialties lay outside of MRI and fMRI data processing, the competition is now one step easier.

The preprocessing pipelines will include:
1) The Athena: resting state fMRI and voxel-based morphometry preprocessing (grey matter) using AFNI and FSL [released]

2) The Burner: voxel-based morphometry processing (grey matter and white matter) using
DARTEL in SPM [coming soon]

3) The NIAK: resting state fMRI preprocessing using the NeuroImaging Analysis Kit on CBRAIN [coming soon]

4) The CIVET: cortical thickness measures extracted using the CIVET pipeline on CBRAIN [coming soon]

Additionally, for May 1, we anticipate the release of extracted timeseries data (in .csv format) and corresponding full- and partial-correlation matrices for a variety of brain parcellation schemes.

For more information and to download data please visit: neurobureau.projects.nitrc.org/ADHD200. A NITRC account is required to download data.

Cheers,
Cameron Craddock, Daniel Margulies, and The Neuro Bureau

Banff workshop

Pierre Bellec — Tue, 09 Nov 2010 19:12:15 GMT

Hi Guys,

Here is the link about the research center in Banff. The deadline for the two days worshop is 4 months before the event.
http://www.birs.ca/applicants/deadlines/

It is a station specialized in mathematics and I think we could qualify. I attended the "Keith Worsley" workshop there two years ago and it was amazing. The station is part of a large complex for artists, in the heart of the rocky mountains and an out-of-this-world site :
http://www.banffcentre.ca/about/

Neuro-regards,

Pierre

RE: meeting 9th November

Pierre Bellec — Mon, 08 Nov 2010 21:44:56 GMT

Excellent ! Thanks Cameron.