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  <title>NITRC News Group Forum: neuroinformatics--vol.-9--issue-2---new-issue-alert</title>
  <link>http://www.nitrc.org/forum/forum.php?forum_id=2250</link>
  <description>In this issue:
The Past, Present, and Future of Single Neuron Reconstruction
Karel Svoboda

EDITORIAL 
The DIADEM and Beyond
Yuan Liu

Commentary 
Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions
Hanchuan Peng, Fuhui Long, Ting Zhao &amp; Eugene Myers
 
Diadem X: Automated 4 Dimensional Analysis of Morphological Data
Hai Yan He &amp; Hollis T. Cline
    
Commentary 
Bright Field Neuronal Preparation Optimized for Automatic Computerized Reconstruction, a Case with Cerebellar Climbing Fibers
Izumi Sugihara
 
Commentary 
A Brief History of Neuronal Reconstruction
Stephen L. Senft
 
Commentary 
Axonal Reconstructions Going Live
Alison J. Canty &amp; Vincenzo De Paola
      
Commentary 
Automated Reconstruction of Neural Tissue and the Role of Large-Scale Simulation
James Kozloski
 
Mini-Review 
The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions
Kerry M. Brown, Germán Barrionuevo, Alison J. Canty, Vincenzo De Paola, Judith A. Hirsch, Gregory S. X. E. Jefferis, Ju Lu, Marjolein Snippe, Izumi Sugihara &amp; Giorgio A. Ascoli
 
Mini-Review 
Neuronal Tracing for Connectomic Studies
Ju Lu
 
Mini-Review 
What’s Black and White About the Grey Matter?
Rodney J. Douglas &amp; Kevan A. C. Martin
 
Principal Curves as Skeletons of Tubular Objects
Erhan Bas &amp; Deniz Erdogmus
 
Original Article 
A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake
Yu Wang, Arunachalam Narayanaswamy, Chia-Ling Tsai &amp; Badrinath Roysam
 
Original Article 
3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors
Arunachalam Narayanaswamy, Yu Wang &amp; Badrinath Roysam
 
Original Article 
The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron
Todd A. Gillette, Kerry M. Brown &amp; Giorgio A. Ascoli
 
Original Article 
Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models
Ting Zhao, Jun Xie, Fernando Amat, Nathan Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long &amp; Eugene Myers
  
Original Article 
Automated Tracing of Neurites from Light Microscopy Stacks of Images
Paarth Chothani, Vivek Mehta &amp; Armen Stepanyants
 
Original Article 
Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors
Engin Türetken, Germán González, Christian Blum &amp; Pascal Fua
 
News item 
DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction
Todd A. Gillette, Kerry M. Brown, Karel Svoboda, Yuan Liu &amp; Giorgio A. Ascoli
 
News Item 
The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions
Jonathan Luisi, Arunachalam Narayanaswamy, Zachary Galbreath &amp; Badrinath Roysam


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