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  <title>NITRC News Group Forum: learning-effective-connectivity-from-fmri-using-autoregressive-hidden-markov-model-with-missing-data.</title>
  <link>http://www.nitrc.org/forum/forum.php?forum_id=6972</link>
  <description>
	&lt;table border=&quot;0&quot; width=&quot;100%&quot;&gt;&lt;tr&gt;&lt;td align=&quot;left&quot;/&gt;&lt;td align=&quot;right&quot;&gt;&lt;a href=&quot;https://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;amp;cmd=Link&amp;amp;LinkName=pubmed_pubmed&amp;amp;from_uid=28065836&quot;&gt;Related Articles&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/table&gt;
        &lt;p&gt;&lt;b&gt;Learning Effective Connectivity from fMRI using Autoregressive hidden Markov model with missing data.&lt;/b&gt;&lt;/p&gt;          
        &lt;p&gt;J Neurosci Methods. 2017 Jan 05;:&lt;/p&gt;
        &lt;p&gt;Authors:  Dang S, Chaudhury S, Lall B, Roy PK&lt;/p&gt;
        &lt;p&gt;Abstract&lt;br/&gt;
        BACKGROUND: Effective connectivity (EC) analysis of neuronal groups using fMRI delivers insights about functional-integration. However, fMRI signal has low-temporal resolution due to down-sampling and indirectly measures underlying neuronal activity.&lt;br/&gt;
        NEW METHOD: The aim is to address above issues for more reliable EC estimates. This paper proposes use of autoregressive hidden Markov model with missing data (AR-HMM-md) in dynamically multi-linked (DML) framework for learning EC using multiple fMRI time series. In our recent work (Dang et al., 2016), we have shown how AR-HMM-md for modelling single fMRI time series outperforms the existing methods. AR-HMM-md models unobserved neuronal activity and lost data over time as variables and estimates their values by joint optimization given fMRI observation sequence.&lt;br/&gt;
        RESULTS: The effectiveness in learning EC is shown using simulated experiments. Also the effects of sampling and noise are studied on EC. Moreover, classification-experiments are performed for Attention-Deficit/Hyperactivity Disorder subjects and age-matched controls for performance evaluation of real data. Using Bayesian model selection, we see that the proposed model converged to higher log-likelihood and demonstrated that group-classification can be performed with higher cross-validation accuracy of above 94% using distinctive network EC which characterizes patients vs.&lt;br/&gt;
        CONTROLS: The full data EC obtained from DML-AR-HMM-md is more consistent with previous literature than the classical multivariate Granger causality method.&lt;br/&gt;
        COMPARISON: The proposed architecture leads to reliable estimates of EC than the existing latent models.&lt;br/&gt;
        CONCLUSIONS: This framework overcomes the disadvantage of low-temporal resolution and improves cross-validation accuracy significantly due to presence of missing data variables and autoregressive process.&lt;br/&gt;
        &lt;/p&gt;&lt;p&gt;PMID: 28065836 [PubMed - as supplied by publisher]&lt;/p&gt;
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