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  <title>NITRC News Group Forum: rapid-whole-brain-resting-state-fmri-at-3--tesla--efficiency-optimized-three-dimensional-epi-versus-repetition-time-matched-simultaneous-multi-slice-epi.</title>
  <link>http://www.nitrc.org/forum/forum.php?forum_id=7837</link>
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	&lt;table border=&quot;0&quot; width=&quot;100%&quot;&gt;&lt;tr&gt;&lt;td align=&quot;left&quot;/&gt;&lt;td align=&quot;right&quot;&gt;&lt;a href=&quot;https://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;amp;cmd=Link&amp;amp;LinkName=pubmed_pubmed&amp;amp;from_uid=28923276&quot;&gt;Related Articles&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/table&gt;
        &lt;p&gt;&lt;b&gt;Rapid whole-brain resting-state fMRI at 3 Tesla: Efficiency-optimized three-dimensional EPI versus repetition time-matched simultaneous-multi-slice EPI.&lt;/b&gt;&lt;/p&gt;          
        &lt;p&gt;Neuroimage. 2017 Sep 15;:&lt;/p&gt;
        &lt;p&gt;Authors:  Stirnberg R, Huijbers W, Brenner D, Poser BA, Breteler M, Stöcker T&lt;/p&gt;
        &lt;p&gt;Abstract&lt;br/&gt;
        State-of-the-art simultaneous-multi-slice (SMS-)EPI and 3D-EPI share several properties that benefit functional MRI acquisition. Both sequences employ equivalent parallel imaging undersampling with controlled aliasing to achieve high temporal sampling rates. As a volumetric imaging sequence, 3D-EPI offers additional means of acceleration complementary to 2D-CAIPIRINHA sampling, such as fast water excitation and elliptical sampling. We performed an application-oriented comparison between a tailored, six-fold CAIPIRINHA-accelerated 3D-EPI protocol at 530 ms temporal and 2.4 mm isotropic spatial resolution and an SMS-EPI protocol with identical spatial and temporal resolution for whole-brain resting-state fMRI at 3 T. The latter required eight-fold slice acceleration to compensate for the lack of elliptical sampling and fast water excitation. Both sequences used vendor-supplied on-line image reconstruction. We acquired test/retest resting-state fMRI scans in ten volunteers, with simultaneous acquisition of cardiac and respiration data, subsequently used for optional physiological noise removal (nuisance regression). We found that the 3D-EPI protocol has significantly increased temporal signal-to-noise ratio throughout the brain as compared to the SMS-EPI protocol, especially when employing motion and nuisance regression. Both sequence types reliably identified known functional networks with stronger functional connectivity values for the 3D-EPI protocol. We conclude that the more time-efficient 3D-EPI primarily benefits from reduced parallel imaging noise due to a higher, actual k-space sampling density compared to SMS-EPI. The resultant BOLD sensitivity increase makes 3D-EPI a valuable alternative to SMS-EPI for whole-brain fMRI at 3 T, with voxel sizes well below 3 mm isotropic and sampling rates high enough to separate dominant cardiac signals from BOLD signals in the frequency domain.&lt;br/&gt;
        &lt;/p&gt;&lt;p&gt;PMID: 28923276 [PubMed - as supplied by publisher]&lt;/p&gt;
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