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  <title>NITRC News Group Forum: larvalign---aligning-gene-expression-patterns-from-the-larval-brain-of-drosophila-melanogaster</title>
  <link>http://www.nitrc.org/forum/forum.php?forum_id=7992</link>
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                  &lt;h3 class=&quot;a-plus-plus&quot;&gt;Abstract&lt;/h3&gt;
                  &lt;p class=&quot;a-plus-plus&quot;&gt;The larval brain of the fruit fly &lt;em class=&quot;a-plus-plus&quot;&gt;Drosophila melanogaster&lt;/em&gt; is a small, tractable model system for neuroscience. Genes for fluorescent marker proteins can be expressed in defined, spatially restricted neuron populations. Here, we introduce the methods for 1) generating a standard template of the larval central nervous system (CNS), 2) spatial mapping of expression patterns from different larvae into a reference space defined by the standard template. We provide a manually annotated gold standard that serves for evaluation of the registration framework involved in template generation and mapping. A method for registration quality assessment enables the automatic detection of registration errors, and a semi-automatic registration method allows one to correct registrations, which is a prerequisite for a high-quality, curated database of expression patterns. All computational methods are available within the &lt;em class=&quot;a-plus-plus&quot;&gt;larvalign&lt;/em&gt; software package: &lt;a href=&quot;https://github.com/larvalign/larvalign/releases/tag/v1.0&quot; class=&quot;a-plus-plus&quot;&gt;https://github.com/larvalign/larvalign/releases/tag/v1.0&lt;/a&gt;
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  <lastBuildDate>Mon, 20 Apr 2026 3:03:19 GMT</lastBuildDate>
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