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  <title>NITRC News Group Forum: estimating-dynamic-connectivity-states-in-fmri-using-regime-switching-factor-models.</title>
  <link>http://www.nitrc.org/forum/forum.php?forum_id=8474</link>
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	&lt;table border=&quot;0&quot; width=&quot;100%&quot;&gt;&lt;tr&gt;&lt;td align=&quot;left&quot;/&gt;&lt;td align=&quot;right&quot;&gt;&lt;a href=&quot;https://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;amp;cmd=Link&amp;amp;LinkName=pubmed_pubmed&amp;amp;from_uid=29610078&quot;&gt;Related Articles&lt;/a&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/table&gt;
        &lt;p&gt;&lt;b&gt;Estimating Dynamic Connectivity States in fMRI Using Regime-Switching Factor Models.&lt;/b&gt;&lt;/p&gt;          
        &lt;p&gt;IEEE Trans Med Imaging. 2018 Apr;37(4):1011-1023&lt;/p&gt;
        &lt;p&gt;Authors:  Ting CM, Ombao H, Samdin SB, Salleh SH&lt;/p&gt;
        &lt;p&gt;Abstract&lt;br/&gt;
        We consider the challenges in estimating the state-related changes in brain connectivity networks with a large number of nodes. Existing studies use the sliding-window analysis or time-varying coefficient models, which are unable to capture both smooth and abrupt changes simultaneously, and rely on ad-hoc approaches to the high-dimensional estimation. To overcome these limitations, we propose a Markov-switching dynamic factor model, which allows the dynamic connectivity states in functional magnetic resonance imaging (fMRI) data to be driven by lower-dimensional latent factors. We specify a regime-switching vector autoregressive (SVAR) factor process to quantity the time-varying directed connectivity. The model enables a reliable, data-adaptive estimation of change-points of connectivity regimes and the massive dependencies associated with each regime. We develop a three-step estimation procedure: 1) extracting the factors using principal component analysis, 2) identifying connectivity regimes in a low-dimensional subspace based on the factor-based SVAR model, and 3) constructing high-dimensional state connectivity metrics based on the subspace estimates. Simulation results show that our estimator outperforms -means clustering of time-windowed coefficients, providing more accurate estimate of time-evolving connectivity. It achieves percentage of reduction in mean squared error by 60% when the network dimension is comparable to the sample size. When applied to the resting-state fMRI data, our method successfully identifies modular organization in the resting-statenetworksin consistencywith other studies. It further reveals changes in brain states with variations across subjects and distinct large-scale directed connectivity patterns across states.&lt;br/&gt;
        &lt;/p&gt;&lt;p&gt;PMID: 29610078 [PubMed - in process]&lt;/p&gt;
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