http://www.nitrc.org/forum/forum.php?forum_id=9136 <p>Update:</p> <p>I think the problem is in using FSL 6.0, in which the output file of the -meanvol option is created without the redundant “.nii” or “.nii.gz” suffix inside the file name, and this is not what MCFLIRT expects (according to the “_gen_outfilename” method in the MCFLIRT class definition under the preprocess.py file).</p> <p>I will therefore uninstall FSL 6.0 and work with FSL 5.0 instead.</p> <p>Best,</p> <p>Roey</p> en-us Copyright 2000-2026 NITRC OSI Sun, 03 May 2026 0:29:07 GMT http://blogs.law.harvard.edu/tech/rss NITRC RSS generator