NITRC Nutil - Neuroimaging utilities Forum: general

RE: Nutil crashing after starting Quantifier

Sharon Christine Yates — Fri, 05 Dec 2025 9:26:34 GMT

Hi,
Sorry for a very late response. It looks like you're trying to run Nutil on MacOs? Unfortunately, Nutil only supports the Windows operating system. If you additional questions, please contact us at <a class="reference external" href="mailto:support%40ebrains.eu">support@ebrains.eu</a>, (ask to be directed to Sharon Yates). 
Best regards,
Sharon

RE: Python plots of nutil quantifier

Sharon Christine Yates — Fri, 05 Dec 2025 8:30:38 GMT

Hi,
Sorry for the very late reply here. The plotting feature in Nutil doesn't work properly, unfortunately. It is best to make your own plots using Python or a plotting program. 
Best regards,
Sharon

Python plots of nutil quantifier

akiko_s — Wed, 11 Jun 2025 3:19:08 GMT

Hi,

Thank you very much for establishing this pipeline.

I'm doing quantitative analysis using nutil v1.1 quantifier, and coordinates and reports files have been made successfully.

But there was no files in the "plot" folder. I installed pyhon and selected the Python.exe in Nutil Settings. I have already installed the packages pandas, numpy, and matplotlib.

Does anyone have the same kind of troubles?

Nutil crashing after starting Quantifier

Danielle Alonzo — Mon, 02 Jun 2025 20:44:07 GMT

<div data-testid="issue-viewer-issue-container">
<div class="Box-sc-g0xbh4-0 gRssIw">
<div class="Box-sc-g0xbh4-0 bDlPR react-issue-body" data-testid="issue-body" data-hpc="true">
<div class="Box-sc-g0xbh4-0 crMLA-D">
<div class="Box-sc-g0xbh4-0 eKTPCn">
<div class="IssueBodyViewer-module__IssueBody--MXyFt">
<div class="markdown-body" data-testid="markdown-body" data-team-hovercards-enabled="true" data-turbolinks="false">
<div class="Box-sc-g0xbh4-0 markdown-body NewMarkdownViewer-module__safe-html-box--cRsz0">
Hello,
Looking for help because I am absolutely stumped as to what is happening.
I think I have everything in the right format, but after I pressstart to run Quantifier on Nutil, it instantly crashes and I get an error message. I attached the error message. Please let me know what I'm doing wrong here.
Thanks!
<hr>
<h2 dir="auto">Translated Report (Full Report Below)</h2>
Process: Nutil [87747] Path: /private/var/folders/*/Nutil.app/Contents/MacOS/Nutil Identifier: com.yourcompany.Nutil Version: ??? Code Type: X86-64 (Translated) Parent Process: launchd [1] User ID: 501
Date/Time: 2025-06-02 10:11:55.5785 -0700 OS Version: macOS 15.5 (24F74) Report Version: 12 Anonymous UUID: B2B0EB93-AF26-58FB-E707-A0C107431F35
Sleep/Wake UUID: FB270A08-2F6D-4EF0-8D81-029795D231A2
Time Awake Since Boot: 310000 seconds Time Since Wake: 7693 seconds
System Integrity Protection: enabled
Notes: RIP register does not match crashing frame (0x0 vs 0x7FF8970A2AE0)
Crashed Thread: 12 WorkerThread
Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000
Termination Reason: Namespace SIGNAL, Code 6 Abort trap: 6 Terminating Process: Nutil [87747]
Application Specific Information: abort() called
Error Formulating Crash Report: RIP register does not match crashing frame (0x0 vs 0x7FF8970A2AE0)
Thread 0:: Dispatch queue: com.apple.main-thread 0 QtWidgets 0x10ea32a38 QWidget::event(QEvent*) + 1080 1 QtWidgets 0x10eadadcd QFrame::event(QEvent*) + 45 2 QtWidgets 0x10e9f7fea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 3 QtWidgets 0x10e9f9476 QApplication::notify(QObject*, QEvent*) + 598 4 QtCore 0x111486d64 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 5 QtWidgets 0x10ea23b6b QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*) + 3467 6 QtWidgets 0x10ea2c9c0 QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*) + 1120 7 QtWidgets 0x10ea23e85 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*) + 4261 8 QtWidgets 0x10ea2c9c0 QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*) + 1120 9 QtWidgets 0x10ea23e85 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*) + 4261 10 QtWidgets 0x10ea05846 0x10e9e7000 + 124998 11 QtWidgets 0x10ea059d2 0x10e9e7000 + 125394 12 QtWidgets 0x10ea32c6d QWidget::event(QEvent*) + 1645 13 QtWidgets 0x10eb46325 QMainWindow::event(QEvent*) + 277 14 QtWidgets 0x10e9f7fea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266 15 QtWidgets 0x10e9f9476 QApplication::notify(QObject*, QEvent*) + 598 16 QtCore 0x111486d64 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212 17 QtCore 0x1114880a9 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809 18 libqcocoa.dylib 0x110c96df9 0x110c5d000 + 237049 19 libqcocoa.dylib 0x110c97568 0x110c5d000 + 238952 20 CoreFoundation 0x7ff809c5b60e CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION + 17 21 CoreFoundation 0x7ff809c5b5b0 __CFRunLoopDoSource0 + 157 22 CoreFoundation 0x7ff809c5b36f __CFRunLoopDoSources0 + 203 23 CoreFoundation 0x7ff809c59fe4 __CFRunLoopRun + 973 24 CoreFoundation 0x7ff809c595d0 CFRunLoopRunSpecific + 536 25 HIToolbox 0x7ff815b500d4 RunCurrentEventLoopInMode + 281 26 HIToolbox 0x7ff815b52e60 ReceiveNextEventCommon + 188 27 HIToolbox 0x7ff815cdc19a _BlockUntilNextEventMatchingListInModeWithFilter + 63 28 AppKit 0x7ff80d62ae2d _DPSNextEvent + 912 29 AppKit 0x7ff80e0b8d27 -[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1263 30 AppKit 0x7ff80d61bf19 -[NSApplication run] + 610 31 libqcocoa.dylib 0x110c961cf 0x110c5d000 + 233935 32 QtCore 0x111482e0f QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag) + 431 33 QtCore 0x111487372 QCoreApplication::exec() + 130 34 Nutil 0x104f08ca6 main + 214 35 dyld 0x20545d530 start + 3056
Thread 1:: com.apple.rosetta.exceptionserver 0 runtime 0x7ff7fff8b0e4 0x7ff7fff87000 + 16612
Thread 2:: UpdateThread 0 ??? 0x7ff8970a2ae0 ??? 1 libsystem_kernel.dylib 0x7ff809b335c2 __semwait_signal + 10 2 libsystem_c.dylib 0x7ff809a2026d nanosleep + 199 3 QtCore 0x1114e893b 0x11128f000 + 2464059 4 Nutil 0x104f83530 0x104f03000 + 525616 5 QtCore 0x1112b1a79 0x11128f000 + 141945 6 libsystem_pthread.dylib 0x7ff809b72df1 _pthread_start + 99 7 libsystem_pthread.dylib 0x7ff809b6e857 thread_start + 15
Thread 3:: com.apple.NSEventThread 0 ??? 0x7ff8970a2ae0 ??? 1 libsystem_kernel.dylib 0x7ff809b30b4a mach_msg2_trap + 10 2 libsystem_kernel.dylib 0x7ff809b3f704 mach_msg2_internal + 83 3 libsystem_kernel.dylib 0x7ff809b37bc3 mach_msg_overwrite + 574 4 libsystem_kernel.dylib 0x7ff809b30e3b mach_msg + 19 5 CoreFoundation 0x7ff809c5b744 __CFRunLoopServiceMachPort + 145 6 CoreFoundation 0x7ff809c5a1ad __CFRunLoopRun + 1430 7 CoreFoundation 0x7ff809c595d0 CFRunLoopRunSpecific + 536 8 AppKit 0x7ff80d77fa2f _NSEventThread + 127 9 libsystem_pthread.dylib 0x7ff809b72df1 _pthread_start + 99 10 libsystem_pthread.dylib 0x7ff809b6e857 thread_start + 15
Thread 4: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 5: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 6:: Dispatch queue: com.apple.root.user-interactive-qos 0 ??? 0x7ff8970a2ae0 ??? 1 libsystem_kernel.dylib 0x7ff809b30b4a mach_msg2_trap + 10 2 libsystem_kernel.dylib 0x7ff809b3f704 mach_msg2_internal + 83 3 libsystem_kernel.dylib 0x7ff809b37bc3 mach_msg_overwrite + 574 4 libsystem_kernel.dylib 0x7ff809b30e3b mach_msg + 19 5 CoreFoundation 0x7ff809c5b744 __CFRunLoopServiceMachPort + 145 6 CoreFoundation 0x7ff809c5a1ad __CFRunLoopRun + 1430 7 CoreFoundation 0x7ff809c595d0 CFRunLoopRunSpecific + 536 8 Foundation 0x7ff80ad05ff3 -[NSRunLoop(NSRunLoop) runMode:beforeDate:] + 216 9 AppKit 0x7ff80dc0cd49 -[NSAnimation _runBlocking] + 456 10 libdispatch.dylib 0x7ff8099c76b9 _dispatch_call_block_and_release + 12 11 libdispatch.dylib 0x7ff8099dd9fc _dispatch_client_callout + 6 12 libdispatch.dylib 0x7ff8099f854b _dispatch_root_queue_drain.cold.3 + 788 13 libdispatch.dylib 0x7ff8099d6a96 _dispatch_root_queue_drain + 98 14 libdispatch.dylib 0x7ff8099d6f15 _dispatch_worker_thread2 + 147 15 libsystem_pthread.dylib 0x7ff809b6f86c _pthread_wqthread + 233 16 libsystem_pthread.dylib 0x7ff809b6e843 start_wqthread + 15
Thread 7: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 8: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 9: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 10: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 11: 0 runtime 0x7ff7fffa99b0 0x7ff7fff87000 + 141744
Thread 12 Crashed:: WorkerThread 0 ??? 0x7ff8970a2ae0 ??? 1 libsystem_kernel.dylib 0x7ff809b37846 __pthread_kill + 10 2 libsystem_pthread.dylib 0x7ff809b72b16 pthread_kill + 259 3 libsystem_c.dylib 0x7ff809a9173e abort + 126 4 libc++abi.dylib 0x7ff809b29180 abort_message + 241 5 libc++abi.dylib 0x7ff809b1a2e4 demangling_terminate_handler() + 240 6 libobjc.A.dylib 0x7ff80979e119 _objc_terminate() + 104 7 libc++abi.dylib 0x7ff809b285cb std::__terminate(void (*)()) + 6 8 libc++abi.dylib 0x7ff809b28586 std::terminate() + 54 9 QtCore 0x1112b1bdc 0x11128f000 + 142300 10 libsystem_pthread.dylib 0x7ff809b72df1 _pthread_start + 99 11 libsystem_pthread.dylib 0x7ff809b6e857 thread_start + 15
Thread 12 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00007ff84b7729c0 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0x00007ff84b76aa80 rsi: 0x000000030ea3e000 rbp: 0x0000000000000000 rsp: 0x000000030ea3dc10 r8: 0x000000030ea3dd88 r9: 0x0000000000000000 r10: 0x00007ff84b7729c0 r11: 0xffffffffffffffff r12: 0x00007ff84b76aa80 r13: 0x0000003000000008 r14: 0x000000000000d19f r15: 0x0000000000000016 rip: rfl: 0x0000000000000287 tmp0: 0xffffffffffffffff tmp1: 0x00007ff8970a2ab4 tmp2: 0x00007ff809b3783c
Binary Images: 0x205457000 - 0x2054f1fff dyld () <3771ea6a-0fe5-3b63-961d-c09e01d5e680> /usr/lib/dyld 0x7ff7fff87000 - 0x7ff7fffb6fff runtime () /usr/libexec/rosetta/runtime 0x10dba8000 - 0x10dc0ffff libRosettaRuntime () <7742e99c-2006-3006-bc1e-1869448c6224> /Library/Apple//libRosettaRuntime 0x104f03000 - 0x105362fff com.yourcompany.Nutil () <6fa960af-fde1-3b35-980d-9fecc27fdafc> /private/var/folders//Nutil.app/Contents/MacOS/Nutil 0x10e1a9000 - 0x10e204fff libtiff.5.dylib () <464166bf-eaff-3b49-b31f-3fc1389f5e04> /private/var/folders//Nutil.app/Contents/Frameworks/libtiff.5.dylib 0x10e2fb000 - 0x10e355fff libomp.dylib () <6bc6bb4b-248b-3cb8-b98d-890ad91386d0> /private/var/folders//Nutil.app/Contents/Frameworks/libomp.dylib 0x10e9e7000 - 0x10ee2dfff org.qt-project.QtWidgets (5.15) <337d3779-8507-33d3-b134-46bd148a7b3e> /private/var/folders//Nutil.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets 0x10fd98000 - 0x11027ffff org.qt-project.QtGui (5.15) <5989f332-2058-304f-91a0-c4835e2c2b3d> /private/var/folders//Nutil.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui 0x10e43a000 - 0x10e46efff org.qt-project.QtXml (5.15) <66656a3d-5677-3597-bd2f-a18d53c75091> /private/var/folders//Nutil.app/Contents/Frameworks/QtXml.framework/Versions/5/QtXml 0x10e649000 - 0x10e759fff org.qt-project.QtNetwork (5.15) <82d25c40-845c-3781-b9c1-9bd0e0584038> /private/var/folders//Nutil.app/Contents/Frameworks/QtNetwork.framework/Versions/5/QtNetwork 0x11128f000 - 0x1117fbfff org.qt-project.QtCore (5.15) /private/var/folders//Nutil.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore 0x10e4ee000 - 0x10e51cfff libjpeg.9.dylib () <5500cebb-26f2-39df-9364-8903b1c286ce> /private/var/folders//Nutil.app/Contents/Frameworks/libjpeg.9.dylib 0x110c5d000 - 0x110dcafff libqcocoa.dylib () <84bf58a7-22b6-3c2e-8bc8-5eb6a39d55e0> /private/var/folders//Nutil.app/Contents/PlugIns/platforms/libqcocoa.dylib 0x10f89c000 - 0x10f8fbfff org.qt-project.QtDBus (5.15) /private/var/folders//Nutil.app/Contents/Frameworks/QtDBus.framework/Versions/5/QtDBus 0x10f9d9000 - 0x10fa04fff org.qt-project.QtPrintSupport (5.15) <4e619c76-8916-379e-b7e2-2d8037ef4c6d> /private/var/folders//Nutil.app/Contents/Frameworks/QtPrintSupport.framework/Versions/5/QtPrintSupport 0x10fd4d000 - 0x10fd59fff libobjc-trampolines.dylib () /usr/lib/libobjc-trampolines.dylib 0x11f4ab000 - 0x11f4d0fff libqmacstyle.dylib () <91d61321-b22d-3ac1-ac5a-2bcd52eaf71e> /private/var/folders//Nutil.app/Contents/PlugIns/styles/libqmacstyle.dylib 0x120b6b000 - 0x1213f1fff com.apple.AGXMetalG15X-M1 (327.5) <2e81be8c-6d5e-3fb1-8e5b-d1921179a913> /System/Library/Extensions/AGXMetalG15X_M1.bundle/Contents/MacOS/AGXMetalG15X_M1 0x11125a000 - 0x111261fff libqgif.dylib () <64246145-3ad8-38f9-bd19-3036bffe1fed> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqgif.dylib 0x111273000 - 0x11127afff libqicns.dylib () <0e8cfcd3-b41e-3b34-9fad-c25dc786c149> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqicns.dylib 0x120160000 - 0x120165fff libqico.dylib () <38cc449f-f224-3a3d-b983-671213e6c3eb> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqico.dylib 0x1201e1000 - 0x120245fff libqjpeg.dylib () <5aa6caff-fc5f-3d43-98ed-744c8cb046ea> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqjpeg.dylib 0x120177000 - 0x12017dfff libqmacheif.dylib () <96217ee4-c7be-362a-9737-99a516d2c3f2> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqmacheif.dylib 0x12018e000 - 0x120193fff libqmacjp2.dylib () /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqmacjp2.dylib 0x1201a4000 - 0x1201a8fff libqtga.dylib () <6c70e75c-dfab-3f68-b84b-91a6f180ee8c> /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqtga.dylib 0x120323000 - 0x120389fff libqtiff.dylib () /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqtiff.dylib 0x1201b6000 - 0x1201bafff libqwbmp.dylib () /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqwbmp.dylib 0x1204a6000 - 0x12053cfff libqwebp.dylib () /private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqwebp.dylib 0x7ff809be0000 - 0x7ff80a092ff2 com.apple.CoreFoundation (6.9) <5adbf847-e5a7-3b3c-8a58-0cf8aa1097bc> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation 0x7ff815aa8000 - 0x7ff815d896ed com.apple.HIToolbox (2.1.1) <1ed7a7b9-e12f-348a-ac39-834f923795b6> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox 0x7ff80d5eb000 - 0x7ff80eb3d336 com.apple.AppKit (6.9) /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit 0x0 - 0xffffffffffffffff ??? () <00000000-0000-0000-0000-000000000000> ??? 0x7ff809b30000 - 0x7ff809b6cb4f libsystem_kernel.dylib () /usr/lib/system/libsystem_kernel.dylib 0x7ff809a11000 - 0x7ff809a99ca7 libsystem_c.dylib () <19f23df9-b4a5-3be3-8777-5c8f0c5a43c8> /usr/lib/system/libsystem_c.dylib 0x7ff809b6d000 - 0x7ff809b78dcf libsystem_pthread.dylib () /usr/lib/system/libsystem_pthread.dylib 0x7ff80acab000 - 0x7ff80ba9c8b1 com.apple.Foundation (6.9) <3e72de1d-c81a-3c8b-9c06-5b1e3186de47> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation 0x7ff8099c6000 - 0x7ff809a0d309 libdispatch.dylib () /usr/lib/system/libdispatch.dylib 0x7ff809b19000 - 0x7ff809b2fff7 libc++abi.dylib () /usr/lib/libc++abi.dylib 0x7ff809782000 - 0x7ff8097c6683 libobjc.A.dylib (*) <4cb7a475-8d55-3968-93fb-8f8921dcc695> /usr/lib/libobjc.A.dylib
External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 0 thread_create: 0 thread_set_state: 0
VM Region Summary: ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%) Writable regions: Total=982.7M written=1990K(0%) resident=1622K(0%) swapped_out=368K(0%) unallocated=980.7M(100%)
<div class="snippet-clipboard-content notranslate position-relative overflow-auto">
<pre class="notranslate"><code class="notranslate"> VIRTUAL REGION
</code></pre>
<div class="zeroclipboard-container position-absolute right-0 top-0"> </div>
</div>
REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 CG image 128K 16 ColorSync 248K 29 CoreAnimation 16.0M 32 CoreGraphics 40K 6 CoreUI image data 2688K 19 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 789.0M 66 MALLOC guard page 288K 18 Rosetta Arena 4096K 2 Rosetta Generic 2232K 555 Rosetta IndirectBranch 1024K 1 Rosetta JIT 128.0M 1 Rosetta Return Stack 220K 22 Rosetta Thread Context 220K 22 STACK GUARD 28K 7 Stack 13.7M 12 Stack Guard 56.0M 5 VM_ALLOCATE 500K 35 VM_ALLOCATE (reserved) 20K 4 reserved VM address space (unallocated) __CTF 824 1 __DATA 33.2M 950 __DATA_CONST 100.1M 938 __DATA_DIRTY 2578K 338 __FONT_DATA 2352 1 __INFO_FILTER 8 1 __LINKEDIT 168.3M 31 __OBJC_RO 61.3M 1 __OBJC_RW 2393K 2 __TEXT 1.1G 977 __TPRO_CONST 8K 2 mapped file 560.2M 119 page table in kernel 1622K 1 shared memory 1388K 22 =========== ======= ======= TOTAL 3.0G 4240 TOTAL, minus reserved VM space 3.0G 4240
<hr>
<h2 dir="auto">Full Report</h2>
{"app_name":"Nutil","timestamp":"2025-06-02 10:11:59.00 -0700","app_version":"","slice_uuid":"6fa960af-fde1-3b35-980d-9fecc27fdafc","build_version":"","platform":1,"bundleID":"com.yourcompany.Nutil","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 15.5 (24F74)","roots_installed":0,"name":"Nutil","incident_id":"F45FE4F7-8EB3-493D-9158-3DE81688134A"} { "uptime" : 310000, "procRole" : "Foreground", "version" : 2, "userID" : 501, "deployVersion" : 210, "modelCode" : "Mac15,6", "coalitionID" : 76764, "osVersion" : { "train" : "macOS 15.5", "build" : "24F74", "releaseType" : "User" }, "captureTime" : "2025-06-02 10:11:55.5785 -0700", "codeSigningMonitor" : 1, "incident" : "F45FE4F7-8EB3-493D-9158-3DE81688134A", "pid" : 87747, "translated" : true, "cpuType" : "X86-64", "roots_installed" : 0, "bug_type" : "309", "procLaunch" : "2025-06-02 10:09:05.8695 -0700", "procStartAbsTime" : 7641077656370, "procExitAbsTime" : 7645150347904, "procName" : "Nutil", "procPath" : "/private/var/folders//Nutil.app/Contents/MacOS/Nutil", "bundleInfo" : {"CFBundleIdentifier":"com.yourcompany.Nutil"}, "storeInfo" : {"deviceIdentifierForVendor":"B2CE83E5-A38C-5840-9844-8717E2BD4C78","thirdParty":true}, "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "com.yourcompany.Nutil", "crashReporterKey" : "B2B0EB93-AF26-58FB-E707-A0C107431F35", "appleIntelligenceStatus" : {"reasons":["notOptedIn","assetIsNotReady"],"state":"unavailable"}, "codeSigningID" : "", "codeSigningTeamID" : "", "codeSigningValidationCategory" : 0, "codeSigningTrustLevel" : 4294967295, "codeSigningAuxiliaryInfo" : 0, "bootSessionUUID" : "42360958-B157-41D2-A744-92E7C6618616", "wakeTime" : 7693, "sleepWakeUUID" : "FB270A08-2F6D-4EF0-8D81-029795D231A2", "sip" : "enabled", "exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"}, "termination" : {"flags":0,"code":6,"namespace":"SIGNAL","indicator":"Abort trap: 6","byProc":"Nutil","byPid":87747}, "asi" : {"libsystem_c.dylib":["abort() called"]}, "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 12, "threads" : [{"id":9363433,"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":13124447312},"r12":{"value":140686820213056},"rosetta":{"tmp2":{"value":4842613904},"tmp1":{"value":58825},"tmp0":{"value":4546684296}},"rbx":{"value":13124448000},"r8":{"value":8},"r15":{"value":13124448000},"r10":{"value":2095104},"rdx":{"value":4540541496,"symbolLocation":1080,"symbol":"QWidget::event(QEvent)"},"rdi":{"value":105553136291200},"r9":{"value":2017519616},"r13":{"value":105553136291200},"rflags":{"value":515},"rax":{"value":140686820213344},"rsp":{"value":13124447120},"r11":{"value":48},"rcx":{"value":32896},"r14":{"value":105553136291073},"rsi":{"value":4540545592,"symbolLocation":5176,"symbol":"QWidget::event(QEvent*)"}},"queue":"com.apple.main-thread","frames":[{"imageOffset":309816,"symbol":"QWidget::event(QEvent*)","symbolLocation":1080,"imageIndex":6},{"imageOffset":998861,"symbol":"QFrame::event(QEvent*)","symbolLocation":45,"imageIndex":6},{"imageOffset":69610,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":266,"imageIndex":6},{"imageOffset":74870,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":598,"imageIndex":6},{"imageOffset":2063716,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":212,"imageIndex":10},{"imageOffset":248683,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*)","symbolLocation":3467,"imageIndex":6},{"imageOffset":285120,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*)","symbolLocation":1120,"imageIndex":6},{"imageOffset":249477,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*)","symbolLocation":4261,"imageIndex":6},{"imageOffset":285120,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*)","symbolLocation":1120,"imageIndex":6},{"imageOffset":249477,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlagsQWidgetPrivate::DrawWidgetFlag, QPainter*, QWidgetRepaintManager*)","symbolLocation":4261,"imageIndex":6},{"imageOffset":124998,"imageIndex":6},{"imageOffset":125394,"imageIndex":6},{"imageOffset":310381,"symbol":"QWidget::event(QEvent*)","symbolLocation":1645,"imageIndex":6},{"imageOffset":1438501,"symbol":"QMainWindow::event(QEvent*)","symbolLocation":277,"imageIndex":6},{"imageOffset":69610,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":266,"imageIndex":6},{"imageOffset":74870,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":598,"imageIndex":6},{"imageOffset":2063716,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":212,"imageIndex":10},{"imageOffset":2068649,"symbol":"QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*)","symbolLocation":809,"imageIndex":10},{"imageOffset":237049,"imageIndex":12},{"imageOffset":238952,"imageIndex":12},{"imageOffset":505358,"symbol":"CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION","symbolLocation":17,"imageIndex":28},{"imageOffset":505264,"symbol":"__CFRunLoopDoSource0","symbolLocation":157,"imageIndex":28},{"imageOffset":504687,"symbol":"__CFRunLoopDoSources0","symbolLocation":203,"imageIndex":28},{"imageOffset":499684,"symbol":"__CFRunLoopRun","symbolLocation":973,"imageIndex":28},{"imageOffset":497104,"symbol":"CFRunLoopRunSpecific","symbolLocation":536,"imageIndex":28},{"imageOffset":688340,"symbol":"RunCurrentEventLoopInMode","symbolLocation":281,"imageIndex":29},{"imageOffset":700000,"symbol":"ReceiveNextEventCommon","symbolLocation":188,"imageIndex":29},{"imageOffset":2310554,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":63,"imageIndex":29},{"imageOffset":261677,"symbol":"_DPSNextEvent","symbolLocation":912,"imageIndex":30},{"imageOffset":11328807,"symbol":"-[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":1263,"imageIndex":30},{"imageOffset":200473,"symbol":"-[NSApplication run]","symbolLocation":610,"imageIndex":30},{"imageOffset":233935,"imageIndex":12},{"imageOffset":2047503,"symbol":"QEventLoop::exec(QFlagsQEventLoop::ProcessEventsFlag)","symbolLocation":431,"imageIndex":10},{"imageOffset":2065266,"symbol":"QCoreApplication::exec()","symbolLocation":130,"imageIndex":10},{"imageOffset":23718,"symbol":"main","symbolLocation":214,"imageIndex":3},{"imageOffset":25904,"symbol":"start","symbolLocation":3056,"imageIndex":0}]},{"id":9363715,"name":"com.apple.rosetta.exceptionserver","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":34097745362944},"r12":{"value":17179869184},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":4462471141383},"tmp0":{"value":10337986281472}},"rbx":{"value":4462471141383},"r8":{"value":7939},"r15":{"value":4362080256},"r10":{"value":1},"rdx":{"value":0},"rdi":{"value":0},"r9":{"value":10767483011072},"r13":{"value":4525791856},"rflags":{"value":2097990},"rax":{"value":268451845},"rsp":{"value":10337986281472},"r11":{"value":0},"rcx":{"value":17314086914},"r14":{"value":4594040076},"rsi":{"value":2616}},"frames":[{"imageOffset":16612,"imageIndex":1}]},{"id":9363878,"name":"UpdateThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":25000000},"r12":{"value":4382447152,"symbolLocation":0,"symbol":"LMessage::lMessage"},"rosetta":{"tmp2":{"value":140703291356600},"tmp1":{"value":140705662642868},"tmp0":{"value":18446744073709551615}},"rbx":{"value":1},"r8":{"value":105553136657504},"r15":{"value":0},"r10":{"value":1},"rdx":{"value":1},"rdi":{"value":3887582668652862547},"r9":{"value":25000000},"r13":{"value":13127216896},"rflags":{"value":646},"rax":{"value":4},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":13127216856},"rsi":{"value":13127216912}},"frames":[{"imageOffset":140705662642912,"imageIndex":31},{"imageOffset":13762,"symbol":"__semwait_signal","symbolLocation":10,"imageIndex":32},{"imageOffset":62061,"symbol":"nanosleep","symbolLocation":199,"imageIndex":33},{"imageOffset":2464059,"imageIndex":10},{"imageOffset":525616,"imageIndex":3},{"imageOffset":141945,"imageIndex":10},{"imageOffset":24049,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":34},{"imageOffset":6231,"symbol":"thread_start","symbolLocation":15,"imageIndex":34}]},{"id":9363896,"name":"com.apple.NSEventThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":234226041487360},"r12":{"value":234226041487360},"rosetta":{"tmp2":{"value":140703291406084},"tmp1":{"value":140705662643152},"tmp0":{"value":18446744073709551615}},"rbx":{"value":234226041487360},"r8":{"value":13643594142096949453},"r15":{"value":2},"r10":{"value":234226041487360},"rdx":{"value":8589934592},"rdi":{"value":4294967295},"r9":{"value":234226041487360},"r13":{"value":21592279046},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":21592279046},"r14":{"value":234226041487360},"rsi":{"value":2}},"frames":[{"imageOffset":140705662642912,"imageIndex":31},{"imageOffset":2890,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":32},{"imageOffset":63236,"symbol":"mach_msg2_internal","symbolLocation":83,"imageIndex":32},{"imageOffset":31683,"symbol":"mach_msg_overwrite","symbolLocation":574,"imageIndex":32},{"imageOffset":3643,"symbol":"mach_msg","symbolLocation":19,"imageIndex":32},{"imageOffset":505668,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":145,"imageIndex":28},{"imageOffset":500141,"symbol":"__CFRunLoopRun","symbolLocation":1430,"imageIndex":28},{"imageOffset":497104,"symbol":"CFRunLoopRunSpecific","symbolLocation":536,"imageIndex":28},{"imageOffset":1657391,"symbol":"_NSEventThread","symbolLocation":127,"imageIndex":30},{"imageOffset":24049,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":34},{"imageOffset":6231,"symbol":"thread_start","symbolLocation":15,"imageIndex":34}]},{"id":9366603,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13125586944},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13126123520},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":54799},"r14":{"value":0},"rsi":{"value":0}}},{"id":9366909,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13124472832},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13125009408},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":92327},"r14":{"value":0},"rsi":{"value":0}}},{"id":9366927,"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":321499776942080},"r12":{"value":321499776942080},"rosetta":{"tmp2":{"value":140703291406084},"tmp1":{"value":140705662643152},"tmp0":{"value":18446744073709551615}},"rbx":{"value":321499776942080},"r8":{"value":15666582},"r15":{"value":2},"r10":{"value":321499776942080},"rdx":{"value":8589934592},"rdi":{"value":4294967295},"r9":{"value":321499776942080},"r13":{"value":21592279046},"rflags":{"value":643},"rax":{"value":268451845},"rsp":{"value":0},"r11":{"value":0},"rcx":{"value":21592279046},"r14":{"value":321499776942080},"rsi":{"value":2}},"queue":"com.apple.root.user-interactive-qos","frames":[{"imageOffset":140705662642912,"imageIndex":31},{"imageOffset":2890,"symbol":"mach_msg2_trap","symbolLocation":10,"imageIndex":32},{"imageOffset":63236,"symbol":"mach_msg2_internal","symbolLocation":83,"imageIndex":32},{"imageOffset":31683,"symbol":"mach_msg_overwrite","symbolLocation":574,"imageIndex":32},{"imageOffset":3643,"symbol":"mach_msg","symbolLocation":19,"imageIndex":32},{"imageOffset":505668,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":145,"imageIndex":28},{"imageOffset":500141,"symbol":"__CFRunLoopRun","symbolLocation":1430,"imageIndex":28},{"imageOffset":497104,"symbol":"CFRunLoopRunSpecific","symbolLocation":536,"imageIndex":28},{"imageOffset":372723,"symbol":"-[NSRunLoop(NSRunLoop) runMode:beforeDate:]","symbolLocation":216,"imageIndex":35},{"imageOffset":6430025,"symbol":"-[NSAnimation _runBlocking]","symbolLocation":456,"imageIndex":30},{"imageOffset":5817,"symbol":"_dispatch_call_block_and_release","symbolLocation":12,"imageIndex":36},{"imageOffset":96764,"symbol":"_dispatch_client_callout","symbolLocation":6,"imageIndex":36},{"imageOffset":206155,"symbol":"_dispatch_root_queue_drain.cold.3","symbolLocation":788,"imageIndex":36},{"imageOffset":68246,"symbol":"_dispatch_root_queue_drain","symbolLocation":98,"imageIndex":36},{"imageOffset":69397,"symbol":"_dispatch_worker_thread2","symbolLocation":147,"imageIndex":36},{"imageOffset":10348,"symbol":"_pthread_wqthread","symbolLocation":233,"imageIndex":34},{"imageOffset":6211,"symbol":"start_wqthread","symbolLocation":15,"imageIndex":34}]},{"id":9367127,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13125029888},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13125566464},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":125519},"r14":{"value":0},"rsi":{"value":0}}},{"id":9367128,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13127241728},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13127778304},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":9007},"r14":{"value":0},"rsi":{"value":0}}},{"id":9367129,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13127798784},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13128335360},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":76647},"r14":{"value":0},"rsi":{"value":0}}},{"id":9367288,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13128355840},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":531},"rax":{"value":13128892416},"rsp":{"value":409604},"r11":{"value":0},"rcx":{"value":124171},"r14":{"value":0},"rsi":{"value":0}}},{"id":9367308,"frames":[{"imageOffset":141744,"imageIndex":1}],"threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":18446744073709551615},"r12":{"value":0},"rosetta":{"tmp2":{"value":0},"tmp1":{"value":0},"tmp0":{"value":0}},"rbx":{"value":0},"r8":{"value":0},"r15":{"value":0},"r10":{"value":0},"rdx":{"value":13128912896},"rdi":{"value":0},"r9":{"value":0},"r13":{"value":0},"rflags":{"value":515},"rax":{"value":13129449472},"rsp":{"value":278532},"r11":{"value":0},"rcx":{"value":0},"r14":{"value":0},"rsi":{"value":0}}},{"triggered":true,"id":9367350,"name":"WorkerThread","threadState":{"flavor":"x86_THREAD_STATE","rbp":{"value":0},"r12":{"value":140704394685056,"symbolLocation":0,"symbol":"__stderrp"},"rosetta":{"tmp2":{"value":140703291373628},"tmp1":{"value":140705662642868},"tmp0":{"value":18446744073709551615}},"rbx":{"value":140704394717632,"symbolLocation":0,"symbol":"_os_xbs_chrooted"},"r8":{"value":13130521992},"r15":{"value":22},"r10":{"value":140704394717632,"symbolLocation":0,"symbol":"_os_xbs_chrooted"},"rdx":{"value":0},"rdi":{"value":140704394685056,"symbolLocation":0,"symbol":"__stderrp"},"r9":{"value":0},"r13":{"value":206158430216},"rflags":{"value":647},"rax":{"value":0},"rsp":{"value":13130521616},"r11":{"value":18446744073709551615},"rcx":{"value":0},"r14":{"value":53663},"rsi":{"value":13130522624}},"frames":[{"imageOffset":140705662642912,"imageIndex":31},{"imageOffset":30790,"symbol":"__pthread_kill","symbolLocation":10,"imageIndex":32},{"imageOffset":23318,"symbol":"pthread_kill","symbolLocation":259,"imageIndex":34},{"imageOffset":526142,"symbol":"abort","symbolLocation":126,"imageIndex":33},{"imageOffset":65920,"symbol":"abort_message","symbolLocation":241,"imageIndex":37},{"imageOffset":4836,"symbol":"demangling_terminate_handler()","symbolLocation":240,"imageIndex":37},{"imageOffset":114969,"symbol":"_objc_terminate()","symbolLocation":104,"imageIndex":38},{"imageOffset":62923,"symbol":"std::__terminate(void ()())","symbolLocation":6,"imageIndex":37},{"imageOffset":62854,"symbol":"std::terminate()","symbolLocation":54,"imageIndex":37},{"imageOffset":142300,"imageIndex":10},{"imageOffset":24049,"symbol":"_pthread_start","symbolLocation":99,"imageIndex":34},{"imageOffset":6231,"symbol":"thread_start","symbolLocation":15,"imageIndex":34}]}], "usedImages" : [ { "source" : "P", "arch" : "x86_64", "base" : 8678371328, "size" : 634880, "uuid" : "3771ea6a-0fe5-3b63-961d-c09e01d5e680", "path" : "/usr/lib/dyld", "name" : "dyld" }, { "source" : "P", "arch" : "arm64", "base" : 140703128121344, "size" : 196608, "uuid" : "fe40a70a-33e8-3d5c-b196-d104da35046d", "path" : "/usr/libexec/rosetta/runtime", "name" : "runtime" }, { "source" : "P", "arch" : "arm64", "base" : 4525293568, "size" : 425984, "uuid" : "7742e99c-2006-3006-bc1e-1869448c6224", "path" : "/Library/Apple//libRosettaRuntime", "name" : "libRosettaRuntime" }, { "source" : "P", "arch" : "x86_64", "base" : 4377817088, "CFBundleIdentifier" : "com.yourcompany.Nutil", "size" : 4587520, "uuid" : "6fa960af-fde1-3b35-980d-9fecc27fdafc", "path" : "/private/var/folders//Nutil.app/Contents/MacOS/Nutil", "name" : "Nutil" }, { "source" : "P", "arch" : "x86_64", "base" : 4531589120, "size" : 376832, "uuid" : "464166bf-eaff-3b49-b31f-3fc1389f5e04", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/libtiff.5.dylib", "name" : "libtiff.5.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4532973568, "size" : 372736, "uuid" : "6bc6bb4b-248b-3cb8-b98d-890ad91386d0", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/libomp.dylib", "name" : "libomp.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4540231680, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtWidgets", "size" : 4485120, "uuid" : "337d3779-8507-33d3-b134-46bd148a7b3e", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets", "name" : "QtWidgets", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4560879616, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtGui", "size" : 5144576, "uuid" : "5989f332-2058-304f-91a0-c4835e2c2b3d", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui", "name" : "QtGui", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4534280192, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtXml", "size" : 217088, "uuid" : "66656a3d-5677-3597-bd2f-a18d53c75091", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtXml.framework/Versions/5/QtXml", "name" : "QtXml", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4536438784, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtNetwork", "size" : 1118208, "uuid" : "82d25c40-845c-3781-b9c1-9bd0e0584038", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtNetwork.framework/Versions/5/QtNetwork", "name" : "QtNetwork", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4582862848, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtCore", "size" : 5689344, "uuid" : "ae40c3fb-88a8-3841-b641-37a1232c7609", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore", "name" : "QtCore", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4535017472, "size" : 192512, "uuid" : "5500cebb-26f2-39df-9364-8903b1c286ce", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/libjpeg.9.dylib", "name" : "libjpeg.9.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4576366592, "size" : 1499136, "uuid" : "84bf58a7-22b6-3c2e-8bc8-5eb6a39d55e0", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/platforms/libqcocoa.dylib", "name" : "libqcocoa.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4555653120, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtDBus", "size" : 393216, "uuid" : "eaeb681e-a8ed-3123-96c9-84639e4250b6", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtDBus.framework/Versions/5/QtDBus", "name" : "QtDBus", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4556951552, "CFBundleShortVersionString" : "5.15", "CFBundleIdentifier" : "org.qt-project.QtPrintSupport", "size" : 180224, "uuid" : "4e619c76-8916-379e-b7e2-2d8037ef4c6d", "path" : "/private/var/folders//Nutil.app/Contents/Frameworks/QtPrintSupport.framework/Versions/5/QtPrintSupport", "name" : "QtPrintSupport", "CFBundleVersion" : "5.15.0" }, { "source" : "P", "arch" : "x86_64", "base" : 4560572416, "size" : 53248, "uuid" : "c08e95cd-6ccf-3f1b-8397-ce1545437e0c", "path" : "/usr/lib/libobjc-trampolines.dylib", "name" : "libobjc-trampolines.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4819955712, "size" : 155648, "uuid" : "91d61321-b22d-3ac1-ac5a-2bcd52eaf71e", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/styles/libqmacstyle.dylib", "name" : "libqmacstyle.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4843810816, "CFBundleShortVersionString" : "327.5", "CFBundleIdentifier" : "com.apple.AGXMetalG15X-M1", "size" : 8941568, "uuid" : "2e81be8c-6d5e-3fb1-8e5b-d1921179a913", "path" : "/System/Library/Extensions/AGXMetalG15X_M1.bundle/Contents/MacOS/AGXMetalG15X_M1", "name" : "AGXMetalG15X_M1", "CFBundleVersion" : "327.5" }, { "source" : "P", "arch" : "x86_64", "base" : 4582645760, "size" : 32768, "uuid" : "64246145-3ad8-38f9-bd19-3036bffe1fed", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqgif.dylib", "name" : "libqgif.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4582748160, "size" : 32768, "uuid" : "0e8cfcd3-b41e-3b34-9fad-c25dc786c149", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqicns.dylib", "name" : "libqicns.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833280000, "size" : 24576, "uuid" : "38cc449f-f224-3a3d-b983-671213e6c3eb", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqico.dylib", "name" : "libqico.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833808384, "size" : 413696, "uuid" : "5aa6caff-fc5f-3d43-98ed-744c8cb046ea", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqjpeg.dylib", "name" : "libqjpeg.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833374208, "size" : 28672, "uuid" : "96217ee4-c7be-362a-9737-99a516d2c3f2", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqmacheif.dylib", "name" : "libqmacheif.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833468416, "size" : 24576, "uuid" : "f908458f-85a0-3ef4-ad5a-1c60ffaea223", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqmacjp2.dylib", "name" : "libqmacjp2.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833558528, "size" : 20480, "uuid" : "6c70e75c-dfab-3f68-b84b-91a6f180ee8c", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqtga.dylib", "name" : "libqtga.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4835127296, "size" : 421888, "uuid" : "bba04024-55a5-39d7-becc-411046e60831", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqtiff.dylib", "name" : "libqtiff.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4833632256, "size" : 20480, "uuid" : "d1878089-e990-394d-9b5c-ab10735eef9a", "path" : "/private/var/folders//Nutil.app/Contents/PlugIns/imageformats/libqwbmp.dylib", "name" : "libqwbmp.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 4836712448, "size" : 618496, "uuid" : "d864cf5b-a4b4-394f-acaf-6b59d7d777fb", "path" : "/private/var/folders/*/Nutil.app/Contents/PlugIns/imageformats/libqwebp.dylib", "name" : "libqwebp.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703292063744, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.CoreFoundation", "size" : 4927475, "uuid" : "5adbf847-e5a7-3b3c-8a58-0cf8aa1097bc", "path" : "/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation", "name" : "CoreFoundation", "CFBundleVersion" : "3502.1.401" }, { "source" : "P", "arch" : "x86_64", "base" : 140703492112384, "CFBundleShortVersionString" : "2.1.1", "CFBundleIdentifier" : "com.apple.HIToolbox", "size" : 3020526, "uuid" : "1ed7a7b9-e12f-348a-ac39-834f923795b6", "path" : "/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox", "name" : "HIToolbox" }, { "source" : "P", "arch" : "x86_64", "base" : 140703352926208, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.AppKit", "size" : 22356791, "uuid" : "c26f6f9e-8230-3c1f-8c48-02d9de58fbc8", "path" : "/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit", "name" : "AppKit", "CFBundleVersion" : "2575.60.5" }, { "size" : 0, "source" : "A", "base" : 0, "uuid" : "00000000-0000-0000-0000-000000000000" }, { "source" : "P", "arch" : "x86_64", "base" : 140703291342848, "size" : 248656, "uuid" : "dab10aa4-8afa-3d02-9cde-6023554ac858", "path" : "/usr/lib/system/libsystem_kernel.dylib", "name" : "libsystem_kernel.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703290167296, "size" : 560296, "uuid" : "19f23df9-b4a5-3be3-8777-5c8f0c5a43c8", "path" : "/usr/lib/system/libsystem_c.dylib", "name" : "libsystem_c.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703291592704, "size" : 48592, "uuid" : "a6d1f05a-0743-31b7-9fe2-268f06ccd51a", "path" : "/usr/lib/system/libsystem_pthread.dylib", "name" : "libsystem_pthread.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703309672448, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.Foundation", "size" : 14620850, "uuid" : "3e72de1d-c81a-3c8b-9c06-5b1e3186de47", "path" : "/System/Library/Frameworks/Foundation.framework/Versions/C/Foundation", "name" : "Foundation", "CFBundleVersion" : "3502.1.401" }, { "source" : "P", "arch" : "x86_64", "base" : 140703289860096, "size" : 291594, "uuid" : "a709554b-250f-3213-b4dd-6708dd83f622", "path" : "/usr/lib/system/libdispatch.dylib", "name" : "libdispatch.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703291248640, "size" : 94200, "uuid" : "b125268e-2b0b-3441-8015-be6e7f16c513", "path" : "/usr/lib/libc++abi.dylib", "name" : "libc++abi.dylib" }, { "source" : "P", "arch" : "x86_64", "base" : 140703287484416, "size" : 280196, "uuid" : "4cb7a475-8d55-3968-93fb-8f8921dcc695", "path" : "/usr/lib/libobjc.A.dylib", "name" : "libobjc.A.dylib" } ], "sharedCache" : { "base" : 140703259328512, "size" : 25769803776, "uuid" : "6e28f2b9-5b29-30c6-af7c-47d23bf9ec34" }, "vmSummary" : "ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)\nWritable regions: Total=982.7M written=1990K(0%) resident=1622K(0%) swapped_out=368K(0%) unallocated=980.7M(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 128K 1 \nActivity Tracing 256K 1 \nCG image 128K 16 \nColorSync 248K 29 \nCoreAnimation 16.0M 32 \nCoreGraphics 40K 6 \nCoreUI image data 2688K 19 \nFoundation 16K 1 \nKernel Alloc Once 8K 1 \nMALLOC 789.0M 66 \nMALLOC guard page 288K 18 \nRosetta Arena 4096K 2 \nRosetta Generic 2232K 555 \nRosetta IndirectBranch 1024K 1 \nRosetta JIT 128.0M 1 \nRosetta Return Stack 220K 22 \nRosetta Thread Context 220K 22 \nSTACK GUARD 28K 7 \nStack 13.7M 12 \nStack Guard 56.0M 5 \nVM_ALLOCATE 500K 35 \nVM_ALLOCATE (reserved) 20K 4 reserved VM address space (unallocated)\n__CTF 824 1 \n__DATA 33.2M 950 \n__DATA_CONST 100.1M 938 \n__DATA_DIRTY 2578K 338 \n__FONT_DATA 2352 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 168.3M 31 \n__OBJC_RO 61.3M 1 \n__OBJC_RW 2393K 2 \n__TEXT 1.1G 977 \n__TPRO_CONST 8K 2 \nmapped file 560.2M 119 \npage table in kernel 1622K 1 \nshared memory 1388K 22 \n=========== ======= ======= \nTOTAL 3.0G 4240 \nTOTAL, minus reserved VM space 3.0G 4240 \n", "legacyInfo" : { "threadTriggered" : { "name" : "WorkerThread" } }, "logWritingSignature" : "bdb4ce36254382ef3e72cba7063162b31e7898c2", "trialInfo" : { "rollouts" : [ { "rolloutId" : "67648e5334a82511f4acf879", "factorPackIds" : {
<div class="snippet-clipboard-content notranslate position-relative overflow-auto">
<pre class="notranslate"><code class="notranslate"> },
"deploymentId" : 240000008
},
{
"rolloutId" : "67fd77fe1f9da9148f70d6ed",
"factorPackIds" : {

},
"deploymentId" : 240000010
}
</code></pre>
<div class="zeroclipboard-container position-absolute right-0 top-0"> </div>
</div>
], "experiments" : [ { "treatmentId" : "d5322b03-2bc4-481a-817e-3640bda0eeee", "experimentId" : "67f4692f84eaf455d73c6090", "deploymentId" : 400000001 } ] }, "reportNotes" : [ "RIP register does not match crashing frame (0x0 vs 0x7FF8970A2AE0)" ] }
Model: Mac15,6, BootROM 11881.121.1, proc 12:6:6 processors, 18 GB, SMC Graphics: Apple M3 Pro, Apple M3 Pro, Built-In Display: Color LCD, 3024 x 1964 Retina, Main, MirrorOff, Online Display: LG FHD, 1920 x 1080 (1080p FHD - Full High Definition), MirrorOff, Online Memory Module: LPDDR5, Micron AirPort: spairport_wireless_card_type_wifi (0x14E4, 0x4388), wl0: Mar 22 2025 02:16:34 version 23.40.30.0.41.51.180 FWID 01-5f726d72 IO80211_driverkit-1475.39 "IO80211_driverkit-1475.39" Apr 18 2025 20:10:40 AirPort: Bluetooth: Version (null), 0 services, 0 devices, 0 incoming serial ports Network Service: Wi-Fi, AirPort, en0 USB Device: USB31Bus USB Device: USB31Bus USB Device: composite_device USB Device: USB31Bus Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc. Thunderbolt Bus: MacBook Pro, Apple Inc.
</div>
</div>
<div class="IssueBodyViewer-module__IssueBodyTaskList--r4XEH">
<div class="d-flex gap-1 flex-wrap" role="toolbar" aria-label="Reactions"><button id=":r22:" class="Box-sc-g0xbh4-0 hRifVb prc-Button-ButtonBase-c50BI prc-Button-IconButton-szpyj" tabindex="0" type="button" data-component="IconButton" aria-label="Add or remove reactions" aria-haspopup="true" aria-expanded="false" data-loading="false" data-no-visuals="true" data-size="small" data-variant="default" aria-describedby=":r22:-loading-announcement"></button></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="react-comments-container" data-testid="issue-viewer-comments-container">
<div class="Box-sc-g0xbh4-0 fDhSWy"> </div>
</div>

RE: Nutil quantifier error 'You need to provide a custom region file (there is no default custom region file for this atlas)'

Elizabeth Teasell — Thu, 27 Mar 2025 14:39:10 GMT

Hi Sharon, 
Thank you so much for all your help. Putting the customised report in seems to ahve fixed whatever the issue was and everything appears to be running smoothly now.
Thanks again, 
Elizabeth 
 
 
Originally posted by Sharon Christine Yates:
<blockquote>
Hi Elizabeth,
As we released Nutil v1.1 recently, I did a test run to check that the custom region file for Allen CCFv3 2017 is incorporated correctly in Nutil. I wasn't able to replicate the issue (the error message did not come up for me), so I'm not sure what's going on in your case. As a workaround, we provide the default "custom region" file for CCFv3 2017 as part of the Nutil package (in the "CustomRegion" folder). If you select "custom" instead of "default" for customised reports, you can navigate to this .xlsx template (CustomRegionMouse_2017.xlsx) and then run the analysis as normal. The custom regions are basically compilations of reference atlas regions, this feature allows you to define your own regions-of-interest, potentially saving a post-processing step in the analysis. 
If you're still having problems, feel free to send me an example dataset (to: support@ebrains.eu , stating that the issue its related to brain atlases and that it's for Sharon Yates). I'll need a segmentation file corresponding to one or a few of your sections, corresponding atlas maps, your .JSON file from VisuAlign (or QuickNII if you haven't used VisuAlign) and your .NUT file from Nutil. 
Best regards,
Sharon
 
</blockquote>

RE: Nutil quantifier error 'You need to provide a custom region file (there is no default custom region file for this atlas)'

Sharon Christine Yates — Thu, 27 Mar 2025 8:48:57 GMT

Hi Elizabeth,
As we released Nutil v1.1 recently, I did a test run to check that the custom region file for Allen CCFv3 2017 is incorporated correctly in Nutil. I wasn't able to replicate the issue (the error message did not come up for me), so I'm not sure what's going on in your case. As a workaround, we provide the default "custom region" file for CCFv3 2017 as part of the Nutil package (in the "CustomRegion" folder). If you select "custom" instead of "default" for customised reports, you can navigate to this .xlsx template (CustomRegionMouse_2017.xlsx) and then run the analysis as normal. The custom regions are basically compilations of reference atlas regions, this feature allows you to define your own regions-of-interest, potentially saving a post-processing step in the analysis. 
If you're still having problems, feel free to send me an example dataset (to: support@ebrains.eu , stating that the issue its related to brain atlases and that it's for Sharon Yates). I'll need a segmentation file corresponding to one or a few of your sections, corresponding atlas maps, your .JSON file from VisuAlign (or QuickNII if you haven't used VisuAlign) and your .NUT file from Nutil. 
Best regards,
Sharon

RE: Nutil quantifier error 'You need to provide a custom region file (there is no default custom region file for this atlas)'

Elizabeth Teasell — Tue, 25 Mar 2025 13:19:00 GMT

Hi Sharon,

Thanks for the quick response. It is still giving the same error.

I am using Nutil v1.1, I just downloaded this yesterday on a different computer as I was trying to run quantifier on my laptop and the whole program would shut down and close before even starting the analysis. I have left all the advanced settings on default, so the customised reports is 'default'. I did save the .NUT file directly before starting.

I do have two colours on my segmentations (red and blue) because I had to run object classification- but I don't think that should be a problem as the object colour (red) is selected.

Thanks for your help,

Elizabeth

RE: Nutil quantifier error 'You need to provide a custom region file (there is no default custom region file for this atlas)'

Sharon Christine Yates — Tue, 25 Mar 2025 8:46:56 GMT

Hi,
Sorry to hear you're having issues. There is something going wrong here, you shouldn't get this message for CCFv3 (2017) as a custom region file is built into the Nutil package. Make sure you select "default" for customised reports (if you select "custom" you'll have to provide your own custom region file, more info here: <a href="https://nutil.readthedocs.io/en/latest/QuantifierReports.html">https://nutil.readthedocs.io/en/latest/QuantifierReports.html).</a> Which version of Nutil are you working with? I recommend either v1.1.0 or v0.8.0. Once you have filled in your parameters in the Nutil user interface, do you make sure to save your .NUT file before pressing start. Hopefully these suggestions will fix the issue. If not, let me know and I'll look into it more closely.
Best regards, Sharon
 
Originally posted by Elizabeth Teasell:
<blockquote>
Hi, 
I am trying to run Nutil quantifier and I am getting the error message: You need to provide a custom region file (there is no default custom region file for this atlas).
I have selected Allen mouse brain atlas CCFv3 (2017) as the reference atlas. 
I am not sure what a custom region file is. 
Thanks in advance
</blockquote>

Nutil quantifier error 'You need to provide a custom region file (there is no default custom region file for this atlas)'

Elizabeth Teasell — Mon, 24 Mar 2025 20:04:01 GMT

Hi, 
I am trying to run Nutil quantifier and I am getting the error message: You need to provide a custom region file (there is no default custom region file for this atlas).
I have selected Allen mouse brain atlas CCFv3 (2017) as the reference atlas. 
I am not sure what a custom region file is. 
Thanks in advance

RE: Nutil can't download

Sharon Christine Yates — Thu, 06 Mar 2025 8:20:42 GMT

Hi,
I'm sorry to hear you're having issues. It sounds like you're working with large segmentation images, this slows down the process a lot. If possible, it can help to downsample these (this may not be possible if the objects you're trying to quantify are very small). You can also turn off coordinate extraction in Nutil, this should improve the processing speed. I would also try running with 23 cores (1 less than the max). If you still have issues, feel free to send me an example dataset (1 segmentation and corresponding atlas map, json file containing the registration info and your .nut file from Nutil). I can then investigate further. Email support@ebrains.eu, that the issue is related to brain atlases and should be directed to Sharon Yates. 
Best regards,
Sharon
Originally posted by cicechen:
<blockquote>
Thank you for your help! I was able to download it, but when I tried running nutil on a large batch (144 images), I encountered the problem that nutil reports images were not found. I'm certain that images are all in the folders and I suspect it's a computational power issue. However, I'm using a computer with 24 cores and decreased the amount of threads to less than 10. I either still have the same issue or Nutil just started running really slow (it run 1% in 8 hrs) after reaching around 30%. I was wondering if you could help me with that please. Thank you!
 
Wed Mar 5 15:44:22 2025 : Error opening file: C:/Users/CNDRUSER/Desktop/QVN/Input/CC17_1_2413_44_55_s048.png
Wed Mar 5 15:44:22 2025 : Error opening file (size 0): C/Users/CNDRUSER/Desktop/QVN/Input/CC17_1_2413_44_55_5048.png
</blockquote>