seecat 2.0.0

mingrui@www.nitrc.org (Mingrui Xia) — Fri, 06 Nov 2026 5:50:00 GMT

SeeCAT 2.0.0 is a rewrite of the Seed-based Connectivity Analysis Toolbox. It is a MATLAB toolbox for brain functional connectivity analysis of resting-state fMRI, from a BIDS dataset to BIDS-derivatives outputs.
It covers:
<ul>
<li>DICOM to BIDS (dcm2niix included)</li>
<li>preprocessing, or fMRIPrep outputs as input</li>
<li>denoising</li>
<li>seed-based functional connectivity</li>
<li>voxel-wise degree centrality</li>
<li>connectivity gradients</li>
<li>multi-site harmonisation (ComBat)</li>
<li>group statistics</li>
<li>viewing</li>
</ul>
It needs only SPM (SPM25, or SPM12 r7771 or later) and is developed and tested on MATLAB R2025a.
The zip contains the toolbox, the English and Chinese PDF manuals (Doc/manual/) and dcm2niix v1.0.20260724 for Windows, macOS and Linux.
To install, unzip it and run addpath('path/to/spm'); addpath('path/to/SeeCAT-2.0.0/SeeCAT'); then type SeeCAT to open the window.
Source code and issues: <a href="https://github.com/mingruixia/SeeCAT">https://github.com/mingruixia/SeeCAT</a>
SHA-256 of SeeCAT-2.0.0.zip: 0d98e1fdcd95056463e02d3a7716e3b3add432f2585541308903c8f3efd1955f

seecat 20230518_beta1

mingrui@www.nitrc.org (Mingrui Xia) — Thu, 18 May 2023 12:52:00 GMT

SeeCAT Releases

seecat 2.0.0

seecat 20230518_beta1