SpiCoDyn Releases

spicodyn SpiCoDyn_3_3 source code

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Thu, 13 Dec 2018 9:12:00 GMT

spicodyn SpiCoDyn_3.3_setup

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Wed, 19 Sep 2018 17:57:00 GMT

Updated version: fixed bugs and improved performances on raw data and spike detection, minor fixings.

spicodyn SpiCoDyn 3.0

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Wed, 27 Jun 2018 18:47:00 GMT

This is the latest version of SpiCoDyn (Setup and source code), including the Filtered Normalized Cross-Correlation Histogram (FNCCH) optimized algorithm, and the resolution of several bugs. The FNCCH is a correlation-based methods able to provide inhibitory functional connectivity detection as well as an improvement in the excitatory functional connectivity detection, with respect to standard cross-correlation and the Information-theory based methods embedded in SpiCoDyn.

spicodyn SpiCoDyn v_1.8

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Mon, 20 Nov 2017 17:39:00 GMT

spicodyn SpiCoDyn_latest_version_source code

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Mon, 20 Nov 2017 17:36:00 GMT

spicodyn SpiCoDyn_Releases_LOG

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Mon, 16 Oct 2017 10:19:00 GMT

spicodyn SpiCoDyn v_1.6 setup

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Mon, 16 Oct 2017 10:07:00 GMT

spicodyn SpiCoDyn v_1.5 setup

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Fri, 06 Oct 2017 9:45:00 GMT

spicodyn Dummy Recordings

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Tue, 19 Sep 2017 8:33:00 GMT

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SPICODYN: a toolbox for the analysis of neuronal network dynamics and connectivity from multi-site spike signal recordings

V. Pastore, A. Godjoski, S. Martinoia, P. Massobrio

List of the dummy recordings available

- 5 seconds of raw data in HDF5 file format from the 3Brain acquisition system (4096 electrodes)
- 30 minutes of raw data in HDF5 file format from the Multi Channel Systems System (60 electrodes)
- 5 minutes of peak trains in Matlab file format (from a 60-electrodes Multi Channel Systems MEA). Sampling frequency 10 kHz.
- 10 minutes of peak trains in text file format (from a 60-electrodes Multi Channel Systems MEA
- 10 minutes of peak trains in binary file format (from 3Brain acquisition system, 4096 electrodes).

spicodyn SpiCoDyn user guide

vitopaolo@www.nitrc.org (Vito PAOLO PASTORE) — Fri, 15 Sep 2017 16:06:00 GMT

video user guide to explain how to execute the main SpiCoDyn's operations.