TAPAS - Translational Algorithms for Psychiatry-Advancing Science Releases

tapas v4.0.0

tapas@www.nitrc.org (TAPAS Admin) — Wed, 09 Sep 2020 12:00:00 GMT

tapas v3.1.0

tapas@www.nitrc.org (TAPAS Admin) — Tue, 26 Mar 2019 22:28:00 GMT

This version contains improvements to several packages, including PHYSIO, HGF, Huge, rDCM and SERIA.

[b][3.1.0] 2019-03-26[/b]

[b]Added[/b][list][*]Get revision info from Matlab.[*]PhysIO R2018.1.2: BioPac txt-file reader (for single file, resp/cardiac/trigger data in different columns)[*]SERIA: Automatic plotting of the seria model.[*]SERIA: Example for single subject.[/list]

[b]Fixed[/b][list][*]Huge: minor bugs.[/list]

[b]Changed[/b][list][*]Huge: Improved documentation.[*]New version of the HGF toolbox (v5.3). Details in tapas/HGF/README.md[*]New version of the rDCM toolbox (v1.1). Details in tapas/rDCM/CHANGELOG.md.[*]New version of the PhysIO Toolbox (R2019a-v7.1.0)[*]BIDS and BioPac readers; code sorted in modules (readin, preproc etc.),[*]also reflected in figure names[*]Updated and extended all examples, and introduced unit testing[*]Full details in tapas/PhysIO/CHANGELOG.md[*]Improved the documentation of SERIA.[/list]

tapas v3.0.0

larskasper@www.nitrc.org (Lars Kasper) — Wed, 19 Sep 2018 22:23:00 GMT

[b]Added[/b][list][*]tapas_get_tapas_revision.m outputs the branch and hash of the repository.[*]Revision is printed when initiliazing tapas.[*]Contributor License Agreement (CLA) file[*]CONTRIBUTING.md explaining coding and style guidelines, signing procedure for CLA file[*]Include the function tapas_get_current_version.m.[*]Implements download of example data from the server using tapas_download_example_data.[*]Now there is log file that list the versions of tapas, the download link and the hash of the file that is downloaded.[*]Use the an external file to do the md5 check sum. See external javamd5.[*]HUGE toolbox: hierarchical unsupervised generative embedding
https://doi.org/10.1016/j.neuroimage.2018.06.073[*]rDCM toolbox: Regression dynamic causal modeling
https://doi.org/10.1016/j.neuroimage.2017.02.090
https://doi.org/10.1016/j.neuroimage.2018.05.058[/list]
[b]Changed[/b][list][*]README.md to include reference to CONTRIBUTING.md and explanation of CLA[*]Dropped 4 digits versioning for 3.[*]The version of tapas is now read from misc/log_tapas.txt. It is the first line of this file.[*]Updated the documentation of SEM.[*]Updated SEM to include hierarchical models for inference.[*]New version of the HGF toolbox (5.2.0). Details in tapas/HGF/README.md.[*]New version of the PhysIO toolbox (R2018.1). Details in tapas/PhysIO/CHANGELOG.md.[*]tapas_init.m displays a message to download the data in case the examples directory is not present.[*]Update MPDCM for supporting up to cuda 9.0 and openmp.[/list][b]Removed[/b][list][*]Deleted the gpo folder.[/list]

tapas v2.7.4.1

larskasper@www.nitrc.org (Lars Kasper) — Mon, 12 Mar 2018 21:22:00 GMT

[list][*]includes PhysIO R2017.3[*]<span style="white-space: pre;"> </span>new Readers: Human Connectome Project (HCP) and Siemens multiband (CMRR) WIP Physlog files[*]extended documentation and FAQ via Wiki[/list]