Computational Morphometry Toolkit (CMTK) Releases

CMTK-contrib 3.4.0

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Tue, 24 Jun 2025 0:24:00 GMT

<p>Installation files in this package were contributed by CMTK users. Install and use at your own risk.</p>
<p>The MacOS X package was provided by Leah Pappalardo (<a class="SDioOwnxzAPcXDcyylAHpexfgnUpHLY " tabindex="0" href="mailto:leahpappalardo2017@gmail.com" target="_self" data-test-app-aware-link="">leahpappalardo2017@gmail.com</a>).</p>

cmtk 3.4.0

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Sat, 02 Mar 2024 0:07:00 GMT

cmtk 3.3.2

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Sun, 06 Nov 2022 21:02:00 GMT

This release merges patches contributed by jim.klo@sri.com to add the following:[list][*]Support valid XML output[*]Additional DICOM values which are required to support submission to NIH NDA.[/list]

cmtk 3.3.1

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Mon, 25 Jan 2016 0:15:00 GMT

The Computational Morphometry Toolkit
==========================================================================

Release Notes -- CMTK 3.3.1
===========================

This is a minor bugfix release that addresses an issue with polynomial
transformations that could cause out-of-bounds memory access.

Release Notes -- CMTK 3.3.0
===========================
This release replaces signed 32bit integers for pixel indexing with signed
64bit integers, thus removing the previous limitation of allowing no more
than 2B pixels per image.
Platform Support
================
CMTK has been built and tested on the following platforms:
- Linux 64bit (Fedora 23), gcc 5.3.1
- Cygwin, gcc 4.9.3
- Windows7 x64, VisualStudio 2015 Express for Desktop
Platform-Specific Issues
========================
MacOS-X
-------
- Code coverage tests are only supported with gcc compiler and SDK 10.6. Older
SDKs or the clang and llvm compiler front-ends do not support code coverage.
http://www.nitrc.org/tracker/index.php?func=detail&aid=5450&group_id=212&atid=877
- To use a pre-combiled binary version of CMTK that was compiled on MacOS with
MacPorts compilers, the following MacPorts packages have to be installed
under /opt/local:
- qt4
- sqlite3
- dcmtk
SolarisStudio Compiler, Linux/Intel
-----------------------------------
- SolarisStudio C++ 12.2 crashes when compiling the "Numerics" library with
full optimization, -O3. A bug report has been filed with, and accepted by,
Oracle:
http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=6989625
Workaround: build "MinSizeRel" configuration, which sets optimization level
to O2. Note that OpenMP must be disabled, because otherwise optimization
is bumped back to O3 by default.
This problem is also fixed in SolarisStudio 12.3, but see next issue.
- SolarisStudio C++ 12.3 crashes when compiling the file
"cmtkEchoPlanarUnwarpFunctional.cxx" with OpenMP support turned on.
Workaround: set "CMTK_USE_OPENMP" configuration option to "OFF"; this will
lead to much of CMTK's functionality executing single-threaded.
Open64 Compiler
---------------
- CMTK does not build in Release mode with the Open64 compiler due to internal
compiler errors.
==========================================================================
This software is available from
http://www.nitrc.org/projects/cmtk/
==========================================================================

cmtk 3.2.3

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Sat, 31 Jan 2015 19:32:00 GMT

Release Notes -- CMTK 3.2.3
===========================

This release fixes some minor bugs such as recursive mkdir on Windows, an
ignored command line option in "dcm2image", and remaining bashisms in a number
of scripts. DICOM files with non-integer rescaling are now read as floats,
which changes the behaviour of "dcm2image" in these cases.

This release also implements a workaround for a bug in MXML 2.8, which
effectively prevents reading of XML files. CMTK now detects that version when
configured and builds the bundled MXML library instead.

See README.txt for full release notes.

cmtk 3.2.2

torstenrohlfing@www.nitrc.org (Torsten Rohlfing) — Fri, 01 Aug 2014 21:10:00 GMT

Release Notes -- CMTK 3.2.2
===========================

This is a minor bug fix release that corrects errors in the vtkxform tool, the
handling of inverse B-spline transformations in cmtk::XformList, and a
configuration issue with Greg Jefferis' munger.pl script.