BioImage Suite Releases

Lichenstein_cannabis_risk 1.0

dustin@www.nitrc.org (Dustin Scheinost) — Wed, 02 Apr 2025 15:04:00 GMT

<p>CPM networks from: https://www.sciencedirect.com/science/article/pii/S0006322325000654</p>

bioimagesuite CPM_OHBM

xilinshen@www.nitrc.org (Xilin Shen) — Mon, 09 Dec 2024 21:34:00 GMT

<p>The matlab script files are examples used in the "How-to CPM" tutorial.</p>

Garrison_ajp 1.0

dustin@www.nitrc.org (Dustin Scheinost) — Thu, 27 Jul 2023 23:43:00 GMT

Yip_jama_pysch 1.0

dustin@www.nitrc.org (Dustin Scheinost) — Thu, 27 Jul 2023 23:33:00 GMT

bioimagesuite Attention network masks for Horien et al. 2022

clh64@www.nitrc.org (Corey Horien) — Fri, 02 Dec 2022 20:32:00 GMT

Functional Brain Atlas from Finn/Shen et al Nature Neuro 2015 1.0

xpapademetris@www.nitrc.org (Xenophon Papademetris) — Wed, 14 Oct 2015 13:45:00 GMT

This is the brain parcellation used in Finn/Shen et al, Nature Neuroscience 2015 and associated files/code.

http://www.nature.com/neuro/journal/vaop/ncurrent/full/nn.4135.html

bioimagesuite ConnectomePredictiveModelingMatlabScripts

xpapademetris@www.nitrc.org (Xenophon Papademetris) — Wed, 02 Jun 2021 14:15:00 GMT

The following two Matlab script files are examples used in the paper "Using connectome-based predictive modeling to predict individual behavior from brain connectivity" by Xilin Shen, et al.

codeshare_behavioralprediction.m implements the connectome based model to predict an external measure, e.g. behavioral scores in a leave-one-subject-out scheme.
permutation_test_example.m estimates the distribution of the test statistics. 1000 CPM models are built based on randomly shuffled pairing between the connectome and the dependent variable. The statistical significance of the true model is calculated as the percentage of cases that exceeding the performance of the true model.

Lichenstein_models Lichenstein_oud_models_v1.0

dustin@www.nitrc.org (Dustin Scheinost) — Mon, 25 Jan 2021 23:33:00 GMT

Barron_models Barron_models_v1.0

dustin@www.nitrc.org (Dustin Scheinost) — Thu, 17 Sep 2020 17:26:00 GMT

bioimagesuite Package: Functional Brain Atlas with 368 Regions

xpapademetris@www.nitrc.org (Xenophon Papademetris) — Thu, 12 Dec 2019 18:33:00 GMT

This is a 368 node parcellation that is a followup to the original 268 region parcellation previously uploaded.