Brainnetome Atlas Viewer Releases

Brainnetome Atlas Viewer BrainnetomeAtlasViewer_20200612

flzhong@www.nitrc.org (lingzhong Fan) — Sat, 13 Jun 2020 4:14:00 GMT

20200612
Fixed the following brain regions with anatomical names being messed up:
ids=[ 125 126 129 130;
133 134 131 132];
The names of regions with ID in row 1 and row 2 were swapped.

The updated info is as follows:
Name: 'SPL_L_5_1'
ID: 125
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7r'
ModifiedCMA: 'rostral area 7'
MNI: [-16 -60 63]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_R_5_1'
ID: 126
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7r'
ModifiedCMA: 'rostral area 7'
MNI: [19 -57 65]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_L_5_3'
ID: 129
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A5l'
ModifiedCMA: 'lateral area 5'
MNI: [-33 -47 50]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_R_5_3'
ID: 130
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A5l'
ModifiedCMA: 'lateral area 5'
MNI: [35 -42 54]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_L_5_5'
ID: 133
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7ip'
ModifiedCMA: 'intraparietal area 7(hIP3)'
MNI: [-27 -59 54]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_R_5_5'
ID: 134
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7ip'
ModifiedCMA: 'intraparietal area 7(hIP3)'
MNI: [31 -54 53]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_L_5_4'
ID: 131
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7pc'
ModifiedCMA: 'postcentral area 7'
MNI: [-22 -47 65]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'
Name: 'SPL_R_5_4'
ID: 132
LocationInFreeSurfer: 'Superior Parietal Lobule'
ModifiedCMAshort: 'A7pc'
ModifiedCMA: 'postcentral area 7'
MNI: [23 -43 67]
Lobe: 'Parietal Lobe'
Gyrusshort: 'SPL'
Gyrus: 'Superior Parietal Lobule'

Brainnetome Atlas Viewer Brainnetome Atlas in Freesurfer and Workbench

flzhong@www.nitrc.org (lingzhong Fan) — Sun, 05 Mar 2017 0:28:00 GMT

[quote]The main files are lh.BN_Atlas.gcs and rh.BN_Atlas.gcs, which are used to map parcellation labels to subjects. And The BN_Atlas_210_LUT.txt is the color table file.
There is a demo script, mapping_to_subjects.sh , to execute the following commands on a sample subject 001. The resulting files are listed in directory 001. We have also mapped the BN_Atlas on fsaverage space, the resulting files are in listed in directory fsaverage.
Brainnetome Atlas in Freesurfer and Workbench
1. Run Freesurfer processing and check the results
2. Download BN_Atlas_freesurfer.zip
3. Map BN_Atlas to a subject
4. show the mapping results in Freeview
5. Calculate parcellation statistics
6. Show in Connectome Workbench[/quote]

Brainnetome Atlas Viewer updated the Brainnetome_Atlas.m for solving bugs in Mac OS X

flzhong@www.nitrc.org (lingzhong Fan) — Wed, 10 Aug 2016 5:58:00 GMT

We have updated the Brainnetome_Atlas.m for solving bugs in Mac OS X. Please use this file to replace the file with the same name in the directory of Brainnetome Atlas Viewer.

Brainnetome Atlas Viewer The maximum probability maps of human Brainnetome Atlas

flzhong@www.nitrc.org (lingzhong Fan) — Wed, 10 Aug 2016 5:44:00 GMT

The maximum probability maps of human Brainnetome Atlas

Brainnetome Atlas Viewer Brainnetome Atlas Viewer

flzhong@www.nitrc.org (lingzhong Fan) — Thu, 02 Jun 2016 6:20:00 GMT

The Brainnetome Project was launched to investigate the hierarchy in the human brain from genetics to neuronal circuits to behaviors, conceptualizing two components (nodes and connections) as the basic research unit. One of the key prerequisites of this project is thus to establish a new human brain atlas, i.e., the Brainnetome Atlas, defining these nodes based on structural connectional architecture. Using non-invasive multimodal neuroimaging techniques, we designed a connectivity-based parcellation framework that identifies the subdivisions of the entire human brain, revealing the in vivo connectivity architecture. The resulting human Brainnetome Atlas, with 210 cortical and 36 subcortical subregions, provides a fine-grained, cross-validated atlas and contains information on both anatomical and functional connections.. This new brain atlas has the following four features: (A) It establishes a fine-grained brain parcellation scheme for 210 cortical and 36 subcortical regions with a coherent pattern of anatomical connections; (B) It supplies a detailed map of anatomical and functional connections; (C) it decodes brain functions using a meta-analytical approach; and (D) It will be an open resource for researchers to use for the analysis of whole brain parcellations, connections, and functions. To facilitate future investigations in healthy and pathological states, the atlas and accompanying software will be made freely available for download at http://atlas.brainnetome.org.

Brainnetome Atlas Viewer Brainnetome Atlas Viewer 1.0

flzhong@www.nitrc.org (lingzhong Fan) — Mon, 14 Jul 2014 13:11:00 GMT