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NITRC Community Latest NewsNetwork Level Analysis Toolbox OHBM Smaller Resolution v1.0
http://www.nitrc.org/forum/forum.php?forum_id=10150
New version of latest release of NLA toolbox pushed to NITRC.Network Level Analysis ToolboxAndrew EckWed, 20 Aug 2025 3:15:41 GMTAll files as a single zip on NITRC
http://www.nitrc.org/forum/forum.php?forum_id=10147
The MS lesion challenge server is now defunct and the challenge is officially finished. A single ZIP file of the test and training data is now available on NITRC2008 MICCAI MS Lesion Segmentation ChallengeMartin StynerTue, 12 Aug 2025 10:11:28 GMTCMIG Pipeline 271b v1.0 released
http://www.nitrc.org/forum/forum.php?forum_id=10144
The CMIG Pipeline is a comprehensive image processing and analysis pipeline that closely matches that used by the ABCD Data Analysis and Informatics Resource Center for the ABCD 6.0 data release. The CMIG Pipeline is shared as Singularity and Docker images along with a collection of required external software packages. CMIG PipelineDonald HaglerTue, 05 Aug 2025 1:07:45 GMT2025 ABCD-ReproNim Course launches September 1st!
http://www.nitrc.org/forum/forum.php?forum_id=10145
Back by popular demand, this ABCD-ReproNim Course is a collaborative effort between the Adolescent Brain Cognitive Development (ABCD) Study and ReproNim, to provide comprehensive background, guided curriculum in reproducible data analysis, and hands-on experience working with ABCD datasets. This is a 16-week self-paced, asynchronous, and free online course (e.g., pre-recorded video lectures, supplementary readings, data exercises) that will prepare students for reproducible and responsible analyses of ABCD data.<br />
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For Students:<br />
* Registration is required, but enrollment is both rolling and open to an unlimited number of students<br />
* Registration (https://docs.google.com/forms/d/e/1FAIpQLSenfG13JYAfFkHggagZ8YT5ZSIOKPq7zsoJP8QwaYK5vNuaVw/viewform) is open<br />
* See Participant information/guidelines (https://www.abcd-repronim.org/students.html)<br />
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For Teaching Fellows: <br />
* Teaching Fellows Applications – Open Now!<br />
* We are recruiting 10 Teaching Fellows to help with the course (e.g., generate data exercises, host virtual office hours, response to student questions). They will receive a $5,000 participation stipend and an additional $2,000 in travel funds to attend the Miami Hackathon, Jan 20-23, 2026<br />
* Application Deadline:August 1, 2025<br />
* Teaching Fellows Information (https://www.abcd-repronim.org/fellows.html)<br />
* Apply Here - https://www.abcd-repronim.org/fellows.html<br />
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Additional Events<br />
* BrainHack Flux, September 1-2, 2025 in Dublin, Ireland<br />
We will be hosting BrainHack Flux (https://fluxsociety.org/brainhack-at-flux-2025-congress/) at Trinity College in Dublin, Ireland (Sept 1-2, 2025), just before the Flux 2025 Conference (https://fluxsociety.org/)! Attendees can register through the Flux 2025 Congress registration portal.<br />
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* ABCD-ReproNim Hackathon, January 20-23, 2026 in Miami, Florida<br />
After students have an opportunity to work through the course material, we will be hosting the ABCD-ReproNim Hackathon at Florida International University in Miami.<br />
Application deadline: November 1, 2025 (link coming soon)ABCD-ReproNim CourseDavid KennedyWed, 30 Jul 2025 3:25:19 GMTVisit NITRC at OHBM 2025 in Brisbane!
http://www.nitrc.org/forum/forum.php?forum_id=10128
NITRC will have an exhibitor booth at OHBM's annual meeting in Brisbane, AU. <br />
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Please swing by to visit. We'd love to know what works and doesn't work for you and catch up!<br />
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Also, we'll be presenting our poster #1931 on Fri, June 27 | 13:45 -15:45 and Sat, June 28 | 13:45 -15:45 NITRC CommunityNina PreussFri, 20 Jun 2025 12:21:07 GMTNITRC-CE v0.57.26 released
http://www.nitrc.org/forum/forum.php?forum_id=10139
We are pleased to announce the release of NITRC-CE v0.57.26. This is primarily a security release. CE now also uses noVNC to connect, which simplifies operation.<br />
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NITRC-CE v0.57.26 and NITRC-CE v0.57.26-LITE are available on AWS Marketplace and as AWS AMIs.<br />
NITRC Computational Environment (NITRC-CE)NITRC ModeratorTue, 10 Jun 2025 1:21:55 GMTFBN125 v1.0 released
http://www.nitrc.org/forum/forum.php?forum_id=10138
FBN125 v1.0 released with templates atlases and tranformsThe FinnBrain Multimodal Neonatal Template and Atlas Collection: T1, T2, and DTI templates, cortical and subcortical atlasesAylin RosbergMon, 02 Jun 2025 5:38:44 GMTNeuroDOT Newsletter: May 2025
http://www.nitrc.org/forum/forum.php?forum_id=10136
The latest NeuroDOT Newsletter (May 23, 2025) has been released on NITRC and on https://oxi.wustl.edu/newsletters/. <br />
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The newsletter contains release notes, highlighted features from the development team, and opportunities to contribute to NeuroDOT and attend workshops.<br />
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If you have any questions or feedback about NeuroDOT, e-mail the development team, at neurodot-support@wustl.edu<br />
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-The NeuroDOT Development TeamNeuroDOTEmma SpehTue, 27 May 2025 12:56:55 GMTNITRC 2.1.72 released
http://www.nitrc.org/forum/forum.php?forum_id=10135
We are pleased to announce the release of NITRC 2.1.72. This release focused heavily on user interface and navigation issues. Please let us know what you think at https://www.nitrc.org/help/contact_us.php<br />
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Full release notes can be found at https://www.nitrc.org/plugins/mwiki/index.php?title=nitrc:NITRC_Release_Notes#NITRC-R_Release_v2.1.72-0_-_05.2F19.2F2025NITRC CommunityNITRC ModeratorTue, 20 May 2025 1:34:15 GMTMCALT 1.5
http://www.nitrc.org/forum/forum.php?forum_id=10127
Today we have released MCALT version 1.5. This release adds functionality to measure regional SUVR for input PET files, jointly with T1w MRI already processed with MCALT. It also adds the TauTemporalMeta atlas, which are the exact regions used in various Jack et al. tau PET publications. Mayo Clinic Adult Lifespan Template and AtlasesChristopher SchwarzWed, 30 Apr 2025 1:40:35 GMT