Copyright 1999-2000 VA Linux Systems, Inc. NITRC Community News http://www.nitrc.org NITRC Community Latest News Network Level Analysis Toolbox OHBM Smaller Resolution v1.0 http://www.nitrc.org/forum/forum.php?forum_id=10150 New version of latest release of NLA toolbox pushed to NITRC. Network Level Analysis Toolbox Andrew Eck Wed, 20 Aug 2025 3:15:41 GMT All files as a single zip on NITRC http://www.nitrc.org/forum/forum.php?forum_id=10147 The MS lesion challenge server is now defunct and the challenge is officially finished. A single ZIP file of the test and training data is now available on NITRC 2008 MICCAI MS Lesion Segmentation Challenge Martin Styner Tue, 12 Aug 2025 10:11:28 GMT CMIG Pipeline 271b v1.0 released http://www.nitrc.org/forum/forum.php?forum_id=10144 The CMIG Pipeline is a comprehensive image processing and analysis pipeline that closely matches that used by the ABCD Data Analysis and Informatics Resource Center for the ABCD 6.0 data release. The CMIG Pipeline is shared as Singularity and Docker images along with a collection of required external software packages. CMIG Pipeline Donald Hagler Tue, 05 Aug 2025 1:07:45 GMT 2025 ABCD-ReproNim Course launches September 1st! http://www.nitrc.org/forum/forum.php?forum_id=10145 Back by popular demand, this ABCD-ReproNim Course is a collaborative effort between the Adolescent Brain Cognitive Development (ABCD) Study and ReproNim, to provide comprehensive background, guided curriculum in reproducible data analysis, and hands-on experience working with ABCD datasets. This is a 16-week self-paced, asynchronous, and free online course (e.g., pre-recorded video lectures, supplementary readings, data exercises) that will prepare students for reproducible and responsible analyses of ABCD data.<br /> <br /> For Students:<br /> * Registration is required, but enrollment is both rolling and open to an unlimited number of students<br /> * Registration (https://docs.google.com/forms/d/e/1FAIpQLSenfG13JYAfFkHggagZ8YT5ZSIOKPq7zsoJP8QwaYK5vNuaVw/viewform) is open<br /> * See Participant information/guidelines (https://www.abcd-repronim.org/students.html)<br /> <br /> For Teaching Fellows: <br /> * Teaching Fellows Applications – Open Now!<br /> * We are recruiting 10 Teaching Fellows to help with the course (e.g., generate data exercises, host virtual office hours, response to student questions). They will receive a $5,000 participation stipend and an additional $2,000 in travel funds to attend the Miami Hackathon, Jan 20-23, 2026<br /> * Application Deadline:August 1, 2025<br /> * Teaching Fellows Information (https://www.abcd-repronim.org/fellows.html)<br /> * Apply Here - https://www.abcd-repronim.org/fellows.html<br /> <br /> Additional Events<br /> * BrainHack Flux, September 1-2, 2025 in Dublin, Ireland<br /> We will be hosting BrainHack Flux (https://fluxsociety.org/brainhack-at-flux-2025-congress/) at Trinity College in Dublin, Ireland (Sept 1-2, 2025), just before the Flux 2025 Conference (https://fluxsociety.org/)! Attendees can register through the Flux 2025 Congress registration portal.<br /> <br /> * ABCD-ReproNim Hackathon, January 20-23, 2026 in Miami, Florida<br /> After students have an opportunity to work through the course material, we will be hosting the ABCD-ReproNim Hackathon at Florida International University in Miami.<br /> Application deadline: November 1, 2025 (link coming soon) ABCD-ReproNim Course David Kennedy Wed, 30 Jul 2025 3:25:19 GMT Visit NITRC at OHBM 2025 in Brisbane! http://www.nitrc.org/forum/forum.php?forum_id=10128 NITRC will have an exhibitor booth at OHBM's annual meeting in Brisbane, AU. <br /> <br /> Please swing by to visit. We'd love to know what works and doesn't work for you and catch up!<br /> <br /> Also, we'll be presenting our poster #1931 on Fri, June 27 | 13:45 -15:45 and Sat, June 28 | 13:45 -15:45 NITRC Community Nina Preuss Fri, 20 Jun 2025 12:21:07 GMT NITRC-CE v0.57.26 released http://www.nitrc.org/forum/forum.php?forum_id=10139 We are pleased to announce the release of NITRC-CE v0.57.26. This is primarily a security release. CE now also uses noVNC to connect, which simplifies operation.<br /> <br /> NITRC-CE v0.57.26 and NITRC-CE v0.57.26-LITE are available on AWS Marketplace and as AWS AMIs.<br /> NITRC Computational Environment (NITRC-CE) NITRC Moderator Tue, 10 Jun 2025 1:21:55 GMT FBN125 v1.0 released http://www.nitrc.org/forum/forum.php?forum_id=10138 FBN125 v1.0 released with templates atlases and tranforms The FinnBrain Multimodal Neonatal Template and Atlas Collection: T1, T2, and DTI templates, cortical and subcortical atlases Aylin Rosberg Mon, 02 Jun 2025 5:38:44 GMT NeuroDOT Newsletter: May 2025 http://www.nitrc.org/forum/forum.php?forum_id=10136 The latest NeuroDOT Newsletter (May 23, 2025) has been released on NITRC and on https://oxi.wustl.edu/newsletters/. <br /> <br /> The newsletter contains release notes, highlighted features from the development team, and opportunities to contribute to NeuroDOT and attend workshops.<br /> <br /> If you have any questions or feedback about NeuroDOT, e-mail the development team, at neurodot-support@wustl.edu<br /> <br /> <br /> -The NeuroDOT Development Team NeuroDOT Emma Speh Tue, 27 May 2025 12:56:55 GMT NITRC 2.1.72 released http://www.nitrc.org/forum/forum.php?forum_id=10135 We are pleased to announce the release of NITRC 2.1.72. This release focused heavily on user interface and navigation issues. Please let us know what you think at https://www.nitrc.org/help/contact_us.php<br /> <br /> Full release notes can be found at https://www.nitrc.org/plugins/mwiki/index.php?title=nitrc:NITRC_Release_Notes#NITRC-R_Release_v2.1.72-0_-_05.2F19.2F2025 NITRC Community NITRC Moderator Tue, 20 May 2025 1:34:15 GMT MCALT 1.5 http://www.nitrc.org/forum/forum.php?forum_id=10127 Today we have released MCALT version 1.5. This release adds functionality to measure regional SUVR for input PET files, jointly with T1w MRI already processed with MCALT. It also adds the TauTemporalMeta atlas, which are the exact regions used in various Jack et al. tau PET publications. Mayo Clinic Adult Lifespan Template and Atlases Christopher Schwarz Wed, 30 Apr 2025 1:40:35 GMT