Copyright 1999-2000 VA Linux Systems, Inc. http://www.nitrc.org Anima scripts Latest News http://www.nitrc.org/forum/forum.php?forum_id=9854 We are happy to announce a feature update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This release adds scripts for EM-based three tissue classes extraction with an atlas prior. It also comes with new additional data needed for some scripts. Anima scripts Olivier Commowick Fri, 29 Jul 2022 1:28:03 GMT http://www.nitrc.org/forum/forum.php?forum_id=9740 We are happy to announce a feature update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This release adds preprocessing scripts for MS lesions or new lesions extraction. Anima scripts Olivier Commowick Wed, 12 Jan 2022 1:49:34 GMT http://www.nitrc.org/forum/forum.php?forum_id=9616 We are happy to announce a feature update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This release includes new additional data, along tracts statistics scripts and a preprocessing script for the 2021 new MS lesions segmentation challenge. <br /> Anima scripts Olivier Commowick Tue, 01 Jun 2021 1:43:28 GMT http://www.nitrc.org/forum/forum.php?forum_id=9564 We are happy to announce a bug fix release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This release includes some bug fixes and an easier to use installation script. Anima scripts Olivier Commowick Tue, 23 Feb 2021 6:23:57 GMT http://www.nitrc.org/forum/forum.php?forum_id=9494 We are happy to announce a major update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This new release contains the following updates:<br /> - Documentation has moved to read-the-docs for an easier to read version.<br /> - New general website for Anima and Anima scripts available<br /> - Requires Anima v4.0 or higher<br /> - Atlasing scripts now produce all their main results in a residualDir folder and better support input file extensions<br /> - Updated atlas for brain extraction in additional data<br /> - Minor bug corrections in diffusion and relaxometry scripts<br /> Anima scripts Olivier Commowick Tue, 08 Sep 2020 12:32:38 GMT http://www.nitrc.org/forum/forum.php?forum_id=9406 We are happy to announce a major update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This new release contains the following updates:<br /> - New multi atlas segmentation script on an OAR cluster<br /> - New T2 relaxometry processing script for mono T2 and myelin water fraction estimation<br /> - Other minor bug corrections Anima scripts Olivier Commowick Thu, 12 Mar 2020 8:13:08 GMT http://www.nitrc.org/forum/forum.php?forum_id=9353 We are happy to announce a major update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This new release contains the following updates:<br /> - Bug corrections in longitudinal atlas creation<br /> - Online atlasing following the method presented in Legouhy et al. Miccai 2019 paper<br /> - new additional data packaging and structure Anima scripts Olivier Commowick Mon, 25 Nov 2019 2:07:07 GMT http://www.nitrc.org/forum/forum.php?forum_id=9148 We are happy to announce a major update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform (as long as python is available for your system). Atlasing scripts require an OAR scheduler. We hope this release will help your research in some way !<br /> <br /> This new release contains the following updates:<br /> <br /> - Requires Anima v3.2 or higher<br /> - Brain extraction now includes an option to further refine the initial mask<br /> - Atlas creation scripts are now python based<br /> - Longitudinal atlas creation scripts<br /> - Several bug corrections and updates to newer version of Anima<br /> - MS segmentation preparation script (registration, denoising and bias correction for further analysis on a reference)<br /> <br /> Anima scripts Olivier Commowick Tue, 02 Apr 2019 2:20:54 GMT http://www.nitrc.org/forum/forum.php?forum_id=8955 We are happy to announce the initial release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform for most scripts (as long as python is available for your system), except for atlasing scripts that require Linux and an OAR scheduler.<br /> <br /> This initial release contains the following scripts:<br /> <br /> - Atlas-based brain extraction<br /> - Atlas creation from anatomical or DTI images<br /> - Diffusion images pre-processing and multi-compartment models estimation Anima scripts Olivier Commowick Mon, 10 Sep 2018 1:10:15 GMT