================================= * DWI QC Report ( DTIPrep 1.2.4 ) * ================================= DWI File: /space/raid5/data/monti/Analysis/VespaDTI/VespaDTI_pipeline/p05_acute/DTIPREP/p05_acute_dwi.nrrd xml File: /space/raid5/data/monti/Analysis/VespaDTI/VespaDTI_pipeline/p05_acute/DTIPREP/p05_acute_dwi_XMLQCResult.xml Check Time: Sat May 27 02:47:54 2017 Image_information_checkingImage_size_check FAILED Image_information_checkingImage_origin_check FAILED Image_information_checkingImage_spacing_check FAILED Image_information_checkingImage_space_check OK ================================ Diffusion Information checking ================================ DWMRI_bValue Check: OK Diffusion vector #mismatch with protocol = 65 image = 34 Diffusion gradient Check: FAILED Diffusion information Check FAILED. ===================== SliceWiseCheck ... ================================ Slice-wise checking ================================ Parameters: CheckTimes: 0 HeadSkipRatio: 0.1 TailSkipRatio: 0.1 BaselineStdevTimes: 3 GradientStdevTimes: 3 ====== Slice-wise Check Artifacts: Region Gradient# Slice# Correlation whole 17 24 0.899325 whole 22 45 0.926406 ===================== InterlaceWiseCheck ... ================================ Interlace-wise checking ================================ Parameters: CorrelationThresholdBaseline: 0.874 CorrelationThresholdGradient: 0.8788 CorrelationStedvTimesBaseline: 2.5 CorrelationStdevTimesGradient: 3 TranslationThreshold: 2 RotationThreshold: 0.5 ====== Interlace-wise Check Artifacts: Gradient#: AngleX AngleY AngleZ TranslationX TranslationY TranslationZ Metric(MI) Correlation 0 0.005173 0.019200 0.006233 0.067178 0.026310 1.494784 0.260701 0.851486 20 -0.013550 -0.004478 -0.004047 -0.023368 0.108741 1.503283 0.259852 0.855707 Single b-value DWI without a b0/baseline! ===================== BaselineAverage ... ================================ Baseline averaging ================================ Average Method: [DWIBaselineAverager::BaselineOptimized]--Averaging Optimized based on baseline images Stop threshold: 0.02 ====== Output Diffusion Gradient direction information: # DirVector 0 [ -0x1.fffed20296b33p-1, 0x1.8bf7f06705c89p-9, 0x1.8bf7f06705c89p-9 ] 1 [ -0x1.059ea57214f05p-10, -0x1.ffff583a53b8ep-1, 0x1.886df82b1f688p-9 ] 2 [ -0x1.fa2ad3e920c07p-6, 0x1.9ab324851a869p-1, -0x1.315182a9930bep-1 ] 3 [ -0x1.b5f37329c347fp-1, -0x1.fd1d041cc532ap-2, -0x1.29d30270f3882p-3 ] 4 [ 0x1.ab52c9d16fc9cp-1, 0x1.404b3c3e74afdp-2, -0x1.d04ab606b7aa2p-2 ] 5 [ 0x1.ab52c9d16fc9cp-1, -0x1.404b3c3e74afdp-2, -0x1.d04ab606b7aa2p-2 ] 6 [ -0x1.b5f37329c347fp-1, 0x1.fd1d041cc532ap-2, -0x1.29d30270f3882p-3 ] 7 [ 0x1.a57a786c22681p-1, -0x1.91ff7164c729fp-9, 0x1.22af5771001d6p-1 ] 8 [ 0x1.19e3c968943e1p-1, 0x1.b7c1376d54973p-2, 0x1.6e84f09528f19p-1 ] 9 [ 0x1.de02a77a2cecdp-2, 0x1.ac2c3c9eecbfbp-1, 0x1.268a50507a6bdp-2 ] 10 [ -0x1.07a13c254a3c6p-1, -0x1.9f2e05ccc89b1p-1, 0x1.1cbd987c6327fp-2 ] 11 [ 0x1.905b7cfe58601p-2, 0x1.09e44fa05143cp-1, -0x1.85117b5286b59p-1 ] 12 [ -0x1.e97d49d7ba66ap-2, 0x1.670196d8f4f94p-9, 0x1.c1b691212513bp-1 ] 13 [ -0x1.905b7cfe58601p-2, 0x1.09e44fa05143cp-1, 0x1.85117b5286b59p-1 ] 14 [ 0x1.07a13c254a3c6p-1, -0x1.9f2e05ccc89b1p-1, -0x1.1cbd987c6327fp-2 ] 15 [ -0x1.de02a77a2cecdp-2, 0x1.ac2c3c9eecbfbp-1, -0x1.268a50507a6bdp-2 ] 16 [ -0x1.c1e9af5ba2bep-4, 0x1.112b5e529bae4p-2, -0x1.ea3af31b152f4p-1 ] 17 [ 0x1.c1e9af5ba2bep-4, 0x1.112b5e529bae4p-2, 0x1.ea3af31b152f4p-1 ] 18 [ 0x1.fa2ad3e920c07p-6, 0x1.9ab324851a869p-1, 0x1.315182a9930bep-1 ] 19 [ 0x1.b9aed56b00ffep-1, -0x1.719c17225b74ap-2, 0x1.6aceaaf35e311p-2 ] 20 [ 0x1.b9aed56b00ffep-1, -0x1.719c17225b74ap-2, -0x1.6aceaaf35e311p-2 ] 21 [ 0x1.b9aed56b00ffep-1, 0x1.719c17225b74ap-2, -0x1.6aceaaf35e311p-2 ] 22 [ 0x1.6d11be6e65387p-2, 0x1.70d801b435265p-2, -0x1.b960956c0d6f5p-1 ] 23 [ 0x1.6cf5f4e4430b1p-2, 0x1.baa51e321a2e8p-1, -0x1.6ad2dcb1465e9p-2 ] 24 [ 0x1.6cf5f4e4430b1p-2, 0x1.baa51e321a2e8p-1, 0x1.6ad2dcb1465e9p-2 ] 25 [ 0x1.6d11be6e65387p-2, 0x1.70d801b435265p-2, 0x1.b960956c0d6f5p-1 ] 26 [ -0x1.6d11be6e65387p-2, 0x1.70d801b435265p-2, -0x1.b960956c0d6f5p-1 ] 27 [ -0x1.6cf5f4e4430b1p-2, 0x1.baa51e321a2e8p-1, -0x1.6ad2dcb1465e9p-2 ] 28 [ -0x1.6cf5f4e4430b1p-2, 0x1.baa51e321a2e8p-1, 0x1.6ad2dcb1465e9p-2 ] 29 [ -0x1.6d11be6e65387p-2, 0x1.70d801b435265p-2, 0x1.b960956c0d6f5p-1 ] ===================== EddyCurrentHeadMotionCorrectIowa ... Transforms: 0 - Parameters: [0.99837330405522, -0.00012121730714421562, 0.00005148470611062677, -0.01352832059277158, 1.0020266104873587, -0.00975184219485537, 0.005837765816955102, -0.00046092992725591333, 0.9932116061692184, -0.22128226405374188, 0.1604299367221437, 0.029644739288985866] 0 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 1 - Parameters: [0.9992354192463193, -0.000022646526322531574, 0.00002502850136484659, -0.000391241118829798, 0.9949795626259997, -0.0031124134348828507, 0.0014308689234914203, 0.002120271751520487, 0.9970203324484607, -0.10284296714990665, -0.5187659820659543, 0.0029578417194866384] 1 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 2 - Parameters: [1.0000261955961496, 0.00006656736489138008, 0.000053821374081724505, 0.0001313893750901747, 0.9996935506639877, -0.0003421229548582087, 0.00003540856726948163, 0.000025323366690199345, 0.9992218486602749, -0.0005004460574220932, -0.0027344794343866245, 0.011368395182500603] 2 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 3 - Parameters: [0.998103607336871, -0.000023064564626267007, 0.00022949049069203372, -0.009470702787380653, 0.9923016166422417, -0.008739543866137149, 0.005692743636983676, -0.0013293695245551703, 0.993446168689713, -0.25110329388419544, 0.3295394503714219, 0.01857864816830103] 3 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 4 - Parameters: [0.9988301320604452, -0.00031777471867440227, 0.0007683098226961614, -0.01030482191327055, 0.9969125325827763, -0.006289117195226939, 0.002864841071290755, -0.0017987339267185965, 0.9926425083383839, -0.19471774949215467, -0.04064375974123267, 0.027715622941158518] 4 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 5 - Parameters: [0.9985699925690381, -0.000007417124642461734, 0.000028813510858478465, -0.012992194637717744, 1.0062118339876924, -0.008470845591679002, 0.003667568413559064, 0.0015299005581283765, 0.9944761239008879, -0.19040936956378568, 0.7555551302122948, 0.023938929556840922] 5 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 6 - Parameters: [0.9987890386762376, -0.0003332077015680614, 0.00038208469106173603, -0.015153628440609272, 0.9994269117501786, -0.00928639020782829, 0.003521398807300634, -0.0003477027082916995, 0.9929410017580694, -0.17854517271318954, 0.4422512136025533, 0.03245058637636595] 6 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 7 - Parameters: [0.9986580611534397, -0.000004833147927874474, 0.000229286534022355, -0.01254673088076759, 1.0017958897099415, -0.009483702144218936, 0.005659094025368156, -0.000767057547585888, 0.9946918239212147, -0.18838063669303845, 0.18520328483074125, -0.014150608601304444] 7 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 8 - Parameters: [0.9988248155232454, 0.000002570866072609837, 0.00001487529712700175, -0.006882096466019815, 0.9932492164262475, -0.008914777158432363, 0.005269826479121071, -0.0005422611519140723, 0.9951088691388204, -0.15383609953218064, -0.35370002516567983, -0.053996574369081216] 8 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 9 - Parameters: [0.9986364383751609, 0.00003805072953737062, 0.00009490322542957137, -0.005972996859152756, 0.9911378791495545, -0.00907088104598703, 0.005727908453090428, 0.0002732027355875158, 0.9946168603718283, -0.17931908825704243, -0.4415894429295, -0.10292469129460012] 9 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 10 - Parameters: [0.9989187932909948, 0.0004809490446962437, 0.0005839630465752563, -0.007377064346799324, 0.9938493234611941, -0.007178234611207782, 0.004291212266573947, -0.0012795985995495624, 0.9938313532162288, -0.1493188760513962, -0.15816232634486574, -0.009609750624537216] 10 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 11 - Parameters: [0.9991766320834674, 0.0004841910365070483, 0.00022131795952623127, -0.005588646208150088, 0.9994644425810084, -0.0033079704790780666, 0.002982128222520612, -0.0002802706179678001, 0.9949981481505361, -0.14133727942196594, 0.519868898013045, 0.025878072078652253] 11 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 12 - Parameters: [0.9995304015061925, -0.0006234509187310826, -0.0016676272699684348, -0.007050126118784893, 1.0037989129873166, -0.004919343221415142, 0.004986801748602026, 0.0008241325609915741, 0.9961739695823453, -0.05184880103315763, 0.7441466994996935, 0.1002276647721435] 12 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 13 - Parameters: [1.0003036986131677, -0.00036918252754571877, -0.001983660869602766, -0.006137882983217566, 1.0101462058089685, -0.003181173981006557, 0.0039360199011244466, 0.003181517015657154, 0.9973907070369024, 0.000005037394772745932, 0.7273856040641143, 0.07548395359286929] 13 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 14 - Parameters: [0.9992393893629894, -0.0007384815303647994, -0.0003329792769035688, -0.007983498030849133, 1.0026032598720462, -0.009316911749537917, 0.003947253354114272, 0.002537442141234697, 0.9943667460802321, -0.10147843352243209, 0.22802697259886734, 0.07381696116153647] 14 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 15 - Parameters: [0.9994366987010065, -0.0003122786290527487, -0.000018733456751460965, -0.007780374378593073, 0.99836990568391, -0.00949448710702306, 0.0030080904860404233, 0.0025956111454304505, 0.996252350615364, -0.07224843415093922, -0.07934194628689391, 0.04233427417195248] 15 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 16 - Parameters: [0.9996519815075274, 0.00000942867862365602, -0.00007632585030244449, -0.006104183358640453, 1.0006317345836782, -0.006300152073854637, 0.0007170746390244569, -0.00047099386834200654, 0.9957217330849047, -0.04777362449685146, -0.26041393797267265, 0.09062023336391921] 16 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 17 - Parameters: [0.9997335914124639, -0.000015074673526243677, -0.0000014217530262120568, -0.0021781193286681383, 0.9977035964682929, -0.005431052010600726, 0.002107769332476392, 0.000851750901472769, 0.9956067785644315, -0.03579982488072153, -0.4554930237876962, 0.012172950611228606] 17 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 18 - Parameters: [0.9995064025458029, -0.00003908858474873722, -0.00011726881635179147, -0.0011341861636640198, 0.9937671007604144, -0.0045418474512668675, 0.002099194334001768, 0.0019330094207312346, 0.9945865219509459, -0.06642645222303208, -0.7081386801964604, 0.008436878491423251] 18 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 19 - Parameters: [0.9988668953523936, -0.0004935659159029873, 0.00039665925539972844, -0.012920848126366727, 1.000049288970784, -0.013963055160813654, 0.009066221872450002, 0.0019413227850924098, 0.9959563227018547, -0.1910279084334043, 0.26871455957800183, 0.06422355919111801] 19 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 20 - Parameters: [0.9998161320017234, -0.002221637913038311, -0.0008209836559981616, -0.009186056278357146, 1.004179415139968, -0.009286789997689802, 0.005569418727701474, 0.002898593204292797, 0.994949696543958, -0.23411108266455533, 0.45689065243717275, 0.18306593854537276] 20 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 21 - Parameters: [0.9984283683632033, -0.00007015482455426027, -0.0003111917641375602, -0.008426960087308775, 0.997108740922753, -0.009015943017451443, 0.005337450253540187, 0.001961747733750657, 0.9942162880501512, -0.21986085227747898, 0.5963885587399843, 0.10954666716555408] 21 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 22 - Parameters: [0.9994094155815799, 0.00002847571861773723, -0.00021739583084274763, -0.00619808220807347, 1.0012106411939876, -0.006978223087890845, 0.0000831022967663858, -0.0000942691373729052, 0.9961432832323379, -0.08544880869120458, 0.8219872308774601, 0.12153781552573642] 22 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 23 - Parameters: [0.9990032694793057, 0.000025549345691517382, 0.00007667397636807686, -0.008875973051553241, 0.9944308328629471, -0.010338470215399352, 0.00027912093422260265, 0.0014187867095638018, 0.9956564275289057, -0.13091612456827809, 0.3287967090397645, 0.13380850973936168] 23 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 24 - Parameters: [0.9993622113067924, 0.000017443289702494594, 0.000026283631120293995, -0.010521014605037597, 0.9927834715311382, -0.011789089824602327, 0.002083815724356165, 0.0034595751593125353, 0.9952267032170041, -0.08321094087661113, 0.2918063357649667, 0.045976593326162225] 24 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 25 - Parameters: [0.9997176394264586, -0.000037390526252369, 0.00017930669701110466, -0.008468517096290266, 0.9948988119632948, -0.010242836879747029, 0.0047969208695183745, 0.0030885026227600227, 0.9957017777338476, -0.044041954654254985, 0.1956770126989876, 0.03721454011610946] 25 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 26 - Parameters: [1.0004019127083181, 0.00011572487266302357, -0.0013730200756922261, -0.01005726064427103, 0.9977820434611226, -0.009927199814664873, 0.004099431020050502, 0.0010762873438234712, 0.9955517374925789, 0.049466560183239645, -0.1321730126467841, 0.16365829783707764] 26 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 27 - Parameters: [0.9992465844795274, -0.00013226352738794376, -0.0009903817300328575, -0.008886629232067136, 0.9964492798293291, -0.010806331151880602, 0.0021620487856582596, -0.0006886690487416829, 0.9935922905747725, -0.05556136306449799, -0.5342094196828274, 0.13005176297234175] 27 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 28 - Parameters: [0.9993100092422801, -0.00015330473215687297, -0.00044030009785224055, -0.007780273226499921, 1.0015855105651772, -0.009833149124831169, 0.002131072941453852, 0.00105573237087705, 0.9943496662026051, -0.08581657772156424, -0.3731076492557587, 0.08284752874389753] 28 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] 29 - Parameters: [0.9993847559179552, 0.0002443773091554414, -0.0007194667433756488, -0.0077340454430090515, 1.0092530413612006, -0.0070610700242801005, 0.001824183358473896, 0.0021652217719346236, 0.9949932579768844, -0.11386616466508652, 0.5105829541367732, 0.052503080898387545] 29 - Fixed Parameters: [-17.581365344278215, 210.76596234823742, 42.541500037921] ===================== GradientCheck ... ================================ Gradient-wise checking ================================ Parameters: TranslationThreshold: 2 RotationThreshold: 0.5 Inter-gradient check Artifacts:: Gradient#: AngleX AngleY AngleZ TranslationX TranslationY TranslationZ Metric(MI) Single b-value DWI without a b0/baseline! ===================== Included gradients: Baselines_indices: 1 QCIndex: 0 Included Gradients: 2 QCIndex: 1 Included Gradients: 3 QCIndex: 2 Included Gradients: 4 QCIndex: 3 Included Gradients: 5 QCIndex: 4 Included Gradients: 6 QCIndex: 5 Included Gradients: 7 QCIndex: 6 Included Gradients: 8 QCIndex: 7 Included Gradients: 9 QCIndex: 8 Included Gradients: 10 QCIndex: 9 Included Gradients: 11 QCIndex: 10 Included Gradients: 12 QCIndex: 11 Included Gradients: 13 QCIndex: 12 Included Gradients: 14 QCIndex: 13 Included Gradients: 15 QCIndex: 14 Included Gradients: 16 QCIndex: 15 Included Gradients: 18 QCIndex: 16 Included Gradients: 19 QCIndex: 17 Included Gradients: 20 QCIndex: 18 Included Gradients: 23 QCIndex: 19 Included Gradients: 24 QCIndex: 20 Included Gradients: 25 QCIndex: 21 Included Gradients: 26 QCIndex: 22 Included Gradients: 27 QCIndex: 23 Included Gradients: 28 QCIndex: 24 Included Gradients: 29 QCIndex: 25 Included Gradients: 30 QCIndex: 26 Included Gradients: 31 QCIndex: 27 Included Gradients: 32 QCIndex: 28 Included Gradients: 33 QCIndex: 29 ===================== Brain Mask Brain mask check NOT set. ===================== Dominant directional artifact detector... Brain mask process has been failed or is not set in protocol ================================ QC result summary: ================================ PASS: Gradient direction #is not less than 6! FAIL: Single b-value DWI without a b0/baseline! PASS: Bad gradient directions #passed in the tolerance!