############################################### ## ## ## Report1 ## ## ## ############################################### ------ Shape Analysis Module start ----- Computing ShapeAnalysisModule... /home/elwannabe/Documenten/HJ/TEST1/Data/Output /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Number of Datas: 4 Executing BatchMake... Case:/...../origData/groupA_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 601ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 601ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh Creating Template Error: SetAppOption: Cannot find parameter: thetaIteration. Error: SetAppOption: Cannot find parameter: thetaIteration.thetaIteration Error: SetAppOption: Cannot find parameter: phiIteration. Error: SetAppOption: Cannot find parameter: phiIteration.phiIteration Error: SetAppOption: Cannot find parameter: medialMesh. Error: SetAppOption: Cannot find parameter: medialMesh.medialMesh Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 3300ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2209950): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2209950): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2209950): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2209950): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Error: SetAppOption: Cannot find parameter: thetaIteration. Error: SetAppOption: Cannot find parameter: thetaIteration.thetaIteration Error: SetAppOption: Cannot find parameter: phiIteration. Error: SetAppOption: Cannot find parameter: phiIteration.phiIteration Error: SetAppOption: Cannot find parameter: medialMesh. Error: SetAppOption: Cannot find parameter: medialMesh.medialMesh Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2d7e430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2d7e430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2d7e430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2d7e430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupA_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 301ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 300ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Error: SetAppOption: Cannot find parameter: thetaIteration. Error: SetAppOption: Cannot find parameter: thetaIteration.thetaIteration Error: SetAppOption: Cannot find parameter: phiIteration. Error: SetAppOption: Cannot find parameter: phiIteration.phiIteration Error: SetAppOption: Cannot find parameter: medialMesh. Error: SetAppOption: Cannot find parameter: medialMesh.medialMesh Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x20f0430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x20f0430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x20f0430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x20f0430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupB_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 301ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Error: SetAppOption: Cannot find parameter: thetaIteration. Error: SetAppOption: Cannot find parameter: thetaIteration.thetaIteration Error: SetAppOption: Cannot find parameter: phiIteration. Error: SetAppOption: Cannot find parameter: phiIteration.phiIteration Error: SetAppOption: Cannot find parameter: medialMesh. Error: SetAppOption: Cannot find parameter: medialMesh.medialMesh Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x1577430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x1577430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x1577430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x1577430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupB_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 300ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Error: SetAppOption: Cannot find parameter: thetaIteration. Error: SetAppOption: Cannot find parameter: thetaIteration.thetaIteration Error: SetAppOption: Cannot find parameter: phiIteration. Error: SetAppOption: Cannot find parameter: phiIteration.phiIteration Error: SetAppOption: Cannot find parameter: medialMesh. Error: SetAppOption: Cannot find parameter: medialMesh.medialMesh Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2f15430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2f15430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2f15430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2f15430): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf_paraPhiHalf.txt Executing BatchMake: Error! Executing BatchMake: Done! Execute Meshmath... meshmath template CreateMRML is not installed in your system -1 will not be created. CreateMRML is not installed in your system 0 will not be created. CreateMRML is not installed in your system 1 will not be created. Run the Particle Correspondence ParticleModule --columMeshFile 5 --sx 0.5 --sy 0.5 --sz 0.5 --HorizontalGridPara 1 --VerticalGridPara 2 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/OutputGroupFile/ShapeAnalysisModule_OutputFileVersion1.csv /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ParticleCorrespondence Modify output csv 0 seconds) MRML CreateMRML is not installed in your system 2 will not be created. ------------------------------------------ NUMBER OF DATA PROCESSED 4 ------------------------------------------ >>>>>>>>>>>>>>>> SEGPOSTPROCESS SUMMARY RESULTS SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA >>>>>>>>>>>>>>>> GENPARAMESH SUMMARY RESULTS >>>>>>>>>>>>>>>> PARATOSPHARMMESH SUMMARY RESULTS One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk ------------------------------------------ CHECK INPUT DATA ------------------------------------------ /...../origData/groupA_02_hippo.gipl.gz /...../origData/groupB_01_hippo.gipl.gz /...../origData/groupB_02_hippo.gipl.gz ############################################### ## ## ## Report2 ## ## ## ############################################### Type: Error Time: Wed Aug 22 09:24:18 2012 Description: ERROR: In /extra/pieper/slicer3/release/Slicer3/Modules/CommandLineModule/vtkCommandLineModuleLogic.cxx, line 1577 vtkCommandLineModuleLogic (0x7fe52dea4bf0): Shape Analysis Module terminated with a fault. Type: Error Time: Wed Aug 22 09:24:18 2012 Description: ERROR: In /extra/pieper/slicer3/release/Slicer3/Modules/CommandLineModule/vtkCommandLineModuleLogic.cxx, line 1499 vtkCommandLineModuleLogic (0x7fe52dea4bf0): Shape Analysis Module standard error: Error: Could not run SegPostProcessCLP: No such file or directory Error: Could not run GenParaMeshCLP: No such file or directory Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf_paraPhiHalf.txt failed to be deleted. Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf_paraMix.txt failed to be deleted. Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: Could not run SegPostProcessCLP: No such file or directory Error: Could not run GenParaMeshCLP: No such file or directory Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_02_hippo_pp_surf_paraPhiHalf.txt failed to be deleted. Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_02_hippo_pp_surf_paraMix.txt failed to be deleted. Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: Could not run SegPostProcessCLP: No such file or directory Error: Could not run GenParaMeshCLP: No such file or directory Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_02_hippo_pp_surf_paraPhiHalf.txt failed to be deleted. Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_02_hippo_pp_surf_paraMix.txt failed to be deleted. Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: Could not run SegPostProcessCLP: No such file or directory Error: Could not run GenParaMeshCLP: No such file or directory Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_01_hippo_pp_surf_paraPhiHalf.txt failed to be deleted. Error: DeleteFile: File /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_01_hippo_pp_surf_paraMix.txt failed to be deleted. Error: Could not run ParaToSPHARMMeshCLP: No such file or directory Executing BatchMake: Error! Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory ERROR: In /opt/local/VTK/VTK_5.6/VTK/IO/vtkDataReader.cxx, line 463 vtkPolyDataReader (0x1572fa0): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surfSPHARM.vtk Type: Information Time: Wed Aug 22 09:24:18 2012 Description: Shape Analysis Module standard output: ------ Shape Analysis Module start ----- Computing ShapeAnalysisModule... /home/elwannabe/Documenten/HJ/TEST1/Data/Output /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Number of Datas: 4 Executing BatchMake... Case:/...../origData/groupA_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 301ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt --iter 1000 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt' --iter '1000' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk''' Status: Finish: Execution time 300ms Doing ParaToSPHARMMesh Creating Template Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 300ms regTemplate: flipTemplate: Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 301ms Case:/...../origData/groupA_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt --iter 1000 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt' --iter '1000' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk''' Status: Finish: Execution time 300ms Doing ParaToSPHARMMesh Creating Template Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_02_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_02_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 301ms regTemplate: flipTemplate: Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 300ms Case:/...../origData/groupB_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt --iter 1000 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt' --iter '1000' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk''' Status: Finish: Execution time 301ms Doing ParaToSPHARMMesh Creating Template Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_02_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_02_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 300ms regTemplate: flipTemplate: Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 300ms Case:/...../origData/groupB_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt --iter 1000 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt' --iter '1000' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk''' Status: Finish: Execution time 300ms Doing ParaToSPHARMMesh Creating Template Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_01_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupB_01_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 301ms regTemplate: flipTemplate: Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/ --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut'' Status: Finish: Execution time 300ms Executing BatchMake: Done! /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Execute Meshmath... Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory Error: Could not run MeshMath: No such file or directory meshmath template mrml /home/elwannabe/Documenten/HJ/TEST1/Data/Output/MRML/ShapeAnalysisModuleMRMLscene_allVTK_Phi.mrml Type: Information Time: Wed Aug 22 09:24:12 2012 Description: Shape Analysis Module command line: /home/elwannabe/Documenten/HJ/TEST1/SPHARM1_10_12_precompiled/spharm-pdm_linux64/ShapeAnalysisModule --sx 0.5 --sy 0.5 --sz 0.5 --label 1 --NumberofIterations 1000 --SubdivLevelValue 10 --SPHARMDegreeValue 15 --columVolumeFile 0 --varX 10 --varY 10 --varZ 10 --regTemplate None --flipTemplate None --paraOutTemplate --noFlip --HorizontalGridPara 1 --VerticalGridPara 2 --DoParticlesCorrespondence --UseProcalign --startRegularization 10 --endRegularization 0.01 --optimizationIt 200 --RelativeWeight 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Input/InputFile_ShapeAnalaysis_4data.csv /home/elwannabe/Documenten/HJ/TEST1/Data/Output Type: Information Time: Wed Aug 22 09:24:12 2012 Description: CommandLineModule Type: Information Time: Wed Aug 22 09:24:12 2012 Description: /home/elwannabe/Documenten/HJ/TEST1/SPHARM1_10_12_precompiled/spharm-pdm_linux64/ShapeAnalysisModule Type: Information Time: Wed Aug 22 09:24:12 2012 Description: Found CommandLine Module, target is ############################################### ## ## ## Report3 ## ## ## ############################################### ------ Shape Analysis Module start ----- Computing ShapeAnalysisModule... /home/elwannabe/Documenten/HJ/TEST1/Data/Output /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Number of Datas: 4 Executing BatchMake... Applications directory: ./BatchMake_Applications// doesn't exist Error (74): 'SetApp() cannot find the application: SegPostProcessCLP Error (93): 'SetApp() cannot find the application: GenParaMeshCLP Error (119): 'SetApp() cannot find the application: ParaToSPHARMMeshCLP Error (165): 'SetApp() cannot find the application: ParaToSPHARMMeshCLP Executing BatchMake: Error! Executing BatchMake: Done! /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Execute Meshmath... Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault Error: MeshMath terminated with an exception: Segmentation fault meshmath template Cannot read the directory /home/elwannabe/Documenten/HJ/TEST1/Data/Output/MRML/TransformFiles/ Segmentation fault