------ Shape Analysis Module start ----- Computing ShapeAnalysisModule... /home/elwannabe/Documenten/HJ/TEST1/Data/Output /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ShapeAnalysisModule.bms Number of Datas: 4 Executing BatchMake... Case:/...../origData/groupA_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 601ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_01_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 600ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_01_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh Creating Template Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut --phiIteration 100 --thetaIteration 100 --medialMesh run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surf' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut --phiIteration '100' --thetaIteration '100' --medialMesh'' Status: Finish: Execution time 3301ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2bfabd0): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2bfabd0): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2bfabd0): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2bfabd0): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut --phiIteration 100 --thetaIteration 100 --medialMesh run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut --phiIteration '100' --thetaIteration '100' --medialMesh'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2a8f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2a8f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2a8f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2a8f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_01_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupA_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupA_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupA_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupA_02_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 300ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupA_02_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut --phiIteration 100 --thetaIteration 100 --medialMesh run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut --phiIteration '100' --thetaIteration '100' --medialMesh'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2cb8160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x2cb8160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2cb8160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x2cb8160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupA_02_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupB_01_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_01_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_01_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_01_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 300ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_01_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut --phiIteration 100 --thetaIteration 100 --medialMesh run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut --phiIteration '100' --thetaIteration '100' --medialMesh'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x3073160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x3073160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x3073160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x3073160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_01_hippo_pp_surf_paraPhiHalf.txt Case:/...../origData/groupB_02_hippo.gipl.gz Doing Post Processing Status: Start SegPostProcessCLP /...../origData/groupB_02_hippo.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz --space 0.5,0.5,0.5 run: 'SegPostProcessCLP' '''/...../origData/groupB_02_hippo.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' --space '0.5,0.5,0.5''' Status: Finish: Execution time 300ms Doing GenParaMesh Status: Start GenParaMeshCLP --EulerFile --outEulerName /home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt --iter 100 --label 1 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk run: 'GenParaMeshCLP' ''--EulerFile --outEulerName '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/EulerFiles/groupB_02_hippo_euler.txt' --iter '100' --label '1' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk''' Error: GenParaMeshCLP terminated with an exception: Child aborted Status: Finish: Execution time 300ms Error: terminate called after throwing an instance of 'itk::ImageFileReaderException' Error: what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Error: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz Error: The file doesn't exist. Error: Filename = /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz GenParaMesh Error:terminate called after throwing an instance of itk::ImageFileReaderException what(): /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/ITKv4/Modules/IO/ImageBase/include/itkImageFileReader.hxx:143: Could not create IO object for file /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/PostProcess/groupB_02_hippo_pp.gipl.gz The file doesnt exist. Filename = Doing ParaToSPHARMMesh regTemplate: groupA_01_hippo_pp_surfSPHARM.vtk flipTemplate: groupA_01_hippo_pp_surfSPHARM.coef Status: Start ParaToSPHARMMeshCLP /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf --regTemplateFileOn --regTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk --flipTemplateOn --flipTemplate /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef --subdivLevel 10 --spharmDegree 15 --FinalFlip 0 --paraOut --phiIteration 100 --thetaIteration 100 --medialMesh run: 'ParaToSPHARMMeshCLP' '''/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk' '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf' --regTemplateFileOn --regTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.vtk' --flipTemplateOn --flipTemplate '/home/elwannabe/Documenten/HJ/TEST1/Data/Output/Template/groupA_01_hippo_pp_surfSPHARM.coef' --subdivLevel '10' --spharmDegree '15' --FinalFlip '0' --paraOut --phiIteration '100' --thetaIteration '100' --medialMesh'' Status: Finish: Execution time 3601ms Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x231f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk Error: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 Error: vtkPolyDataReader (0x231f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk ParaToSPHARMMesh: ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x231f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf.vtk ERROR: In /biomed-resimg/work/paniagua/spharm-pdm/spharm-pdm-build/VTK/IO/vtkDataReader.cxx, line 462 vtkPolyDataReader (0x231f160): Unable to open file: /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_para.vtk /home/elwannabe/Documenten/HJ/TEST1/Data/Output/Mesh/SPHARM/groupB_02_hippo_pp_surf_paraPhiHalf.txt Executing BatchMake: Error! Executing BatchMake: Done! Execute Meshmath... meshmath template CreateMRML is not installed in your system -1 will not be created. CreateMRML is not installed in your system 0 will not be created. CreateMRML is not installed in your system 1 will not be created. Run the Particle Correspondence ParticleModule --columMeshFile 5 --sx 0.5 --sy 0.5 --sz 0.5 --HorizontalGridPara 1 --VerticalGridPara 2 /home/elwannabe/Documenten/HJ/TEST1/Data/Output/OutputGroupFile/ShapeAnalysisModule_OutputFileVersion1.csv /home/elwannabe/Documenten/HJ/TEST1/Data/Output/ParticleCorrespondence Modify output csv 1 seconds) MRML CreateMRML is not installed in your system 2 will not be created. ------------------------------------------ NUMBER OF DATA PROCESSED 4 ------------------------------------------ >>>>>>>>>>>>>>>> SEGPOSTPROCESS SUMMARY RESULTS SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA SegPostProcess file missing : /_pp.gipl.gz CHECK INPUT DATA >>>>>>>>>>>>>>>> GENPARAMESH SUMMARY RESULTS >>>>>>>>>>>>>>>> PARATOSPHARMMESH SUMMARY RESULTS One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_procalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk One or more surfSPHARM file(s) missing : /home/elwannabe/Documenten/HJ/TEST1/Data/OutputMesh/SPHARM/_pp_surfSPHARM_ellalign.vtk ------------------------------------------ CHECK INPUT DATA ------------------------------------------ /...../origData/groupA_02_hippo.gipl.gz /...../origData/groupB_01_hippo.gipl.gz /...../origData/groupB_02_hippo.gipl.gz