{
    "data": {
        "BrainMask": "/home/chong30/STXandMASK/223008-v06-1-24mo-20160922/stx_MNBCP223008-v06-1-24mo-20160922_t1w_bs_FinalMask-edit.nrrd",
        "CerebellumMask": "",
        "SubjectVentricleMask": "",
        "T1img": "/home/chong30/STXandMASK/223008-v06-1-24mo-20160922/stx_MNBCP223008-v06-1-24mo-20160922_t1w_bs.nrrd",
        "T2img": "/home/chong30/STXandMASK/223008-v06-1-24mo-20160922/stx_MNBCP223008-v06-1-24mo-20160922_t2w_bs.nrrd",
        "TissueSeg": "",
        "output_dir": "/home/chong30/Output/223008-v06-1-24mo-20160922"
    },
    "executables": [
        {
            "name": "ABC_CLI",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/ABC_CLI"
        },
        {
            "name": "ANTS",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/ANTS"
        },
        {
            "name": "BRAINSFit",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/BRAINSFit"
        },
        {
            "name": "ImageMath",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath"
        },
        {
            "name": "ImageStat",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageStat"
        },
        {
            "name": "WarpImageMultiTransform",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/WarpImageMultiTransform"
        },
        {
            "name": "bet",
            "path": ""
        },
        {
            "name": "convertITKformats",
            "path": "/home/chong30/Auto_EACSF-release-v1.3/usr/bin/convertITKformats"
        },
        {
            "name": "python3",
            "path": "/home/chong30/anaconda3/envs/mri/bin/python3"
        }
    ],
    "parameters": {
        "ACPC_index": 70,
        "ACPC_mm": 0,
        "ANTS_T1_weight": 1,
        "ANTS_gaussian_sig": 3,
        "ANTS_iterations_val": "100x50x25",
        "ANTS_reg_type": "GreedyDiffeo",
        "ANTS_sim_metric": "CC",
        "ANTS_sim_param": 4,
        "ANTS_transformation_step": 0.25,
        "CSFLabel": 3,
        "LH_innerSurface": "",
        "RH_innerSurface": "",
        "registrationAtlas": "",
        "skullStrippingAtlasesDirectory": "",
        "templateInvMaskVentricle": "",
        "templateT1Ventricle": "",
        "tissueSegAtlasDirectory": "/home/chong30/pediatric-atlas-1year-T1-ABC/pediatric-atlas-1year-T1-ABC/DeepGray5Class_stripped"
    }
}
