While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ABC_CLI /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ABC_CLI /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/ABCparam.xml Following error(s) occured : Run without any arguments to see command line options Failed opening /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/ABC_Segmentation/T1_stripped_to_template_EMS.affine While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/ABC_Segmentation/T1_stripped_labels_EMS.nrrd -outfile /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_MID00.nrrd -mask /home/chong30/UZ/Test_input/brainmask.auto.mgz Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/ABC_Segmentation/T1_stripped_labels_EMS.nrrd The file doesn't exist. Filename = /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/ABC_Segmentation/T1_stripped_labels_EMS.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_MID00.nrrd -outfile /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID01.nrrd -mask coronal_mask_70.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_MID00.nrrd The file doesn't exist. Filename = /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_MID00.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID01.nrrd -outfile /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID02.nrrd -extractLabel 3 Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID01.nrrd The file doesn't exist. Filename = /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID01.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID02.nrrd -outfile /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID03.nrrd -conComp 1 Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID02.nrrd The file doesn't exist. Filename = /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID02.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID03.nrrd -mask brainmask.auto_Erosion01_inv.nrrd -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID03.nrrd The file doesn't exist. Filename = /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID03.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd -mask coronal_mask_70.nrrd -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd -mask /home/chong30/UZ/BMS_101/Output 4 -nrrd adult atlas/T1_stripped_labels_EMS_MID02.nrrd -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd -erode 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero.nrrd -mask brainmask.auto_Erosion.nrrd -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking.nrrd -conComp 1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -dilate 1,1 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -threshold 0,0 -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd While running : /home/chong30/anaconda3/envs/mri/bin/python3 Following error(s) occured : While running : /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath /home/chong30/Auto_EACSF-release-v1.3/usr/bin/ImageMath T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd -mask T1_stripped_labels_EMS_FINAL_Partial_CSF_Ero_Masking_conComp_dil.nrrd -outfile T1_stripped_labels_EMS_FINAL_Partial_CSF_QCistern.nrrd Following error(s) occured : terminate called after throwing an instance of 'itk::ImageFileReaderException' what(): /work/alemaout/install/include/ITK-4.13/itkImageFileReader.hxx:143: Could not create IO object for reading file T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd The file doesn't exist. Filename = T1_stripped_labels_EMS_FINAL_Partial_CSF.nrrd