Waxholm Space atlas of the Sprague Dawley rat brain Label WHS_SD_rat_atlas_v3.nii.gz WHS_SD_rat_atlas_v3.nii.gz

descending corticofugal pathways substantia nigra subthalamic nucleus molecular layer of the cerebellum granule cell level of the cerebellum alveus of the hippocampus inferior cerebellar peduncle cingulate cortex, area 2 striatum globus pallidus entopeduncular nucleus ventricular system medial lemniscus facial nerve anterior commissure, anterior part anterior commissure, posterior part ventral hippocampal commissure thalamus septal region optic nerve optic tract and optic chiasm pineal gland spinal cord commissure of the superior colliculus brainstem hypothalamic region superficial gray layer of the superior colliculus periaqueductal gray fornix mammillothalamic tract commissural stria terminalis deeper layers of the superior colliculus periventricular gray genu of the facial nerve pontine nuclei fimbria of the hippocampus fasciculus retroflexus stria medullaris of the thalamus stria terminalis posterior commissure glomerular layer of the accessory olfactory bulb glomerular layer of the olfactory bulb olfactory bulb corpus callosum and associated subcortical white matter brachium of the superior colliculus inferior colliculus, commissure central canal interpeduncular nucleus ascending fibers of the facial nerve anterior commissure inferior olive spinal trigeminal nucleus spinal trigeminal tract frontal association cortex middle cerebellar peduncle transverse fibers of the pons habenular commissure nucleus of the stria medullaris basal forebrain region supraoptic decussation medial lemniscus decussation pyramidal decussation neocortex bed nucleus of the stria terminalis pretectal region cornu ammonis 3 dentate gyrus cornu ammonis 2 cornu ammonis 1 fasciola cinereum subiculum postrhinal cortex presubiculum parasubiculum perirhinal area 35 perirhinal area 36 entorhinal cortex lateral entorhinal cortex vestibular apparatus cochlea cochlear nerve vestibular nerve ventral cochlear nucleus, granule cell layer 4th ventricle dorsal cochlear nucleus, molecular layer dorsal cochlear nucleus, fusiform and granule layer dorsal cochlear nucleus, deep core acoustic striae trapezoid body nucleus of the trapezoid body superior paraolivary nucleus medial superior olive lateral superior olive superior periolivary region ventral periolivary nuclei lateral lemniscus, ventral nucleus lateral lemniscus, intermediate nucleus lateral lemniscus, dorsal nucleus lateral lemniscus, commissure lateral lemniscus inferior colliculus, dorsal cortex inferior colliculus, central nucleus inferior colliculus, external cortex inferior colliculus, brachium medial geniculate body, medial division medial geniculate body, dorsal division medial geniculate body, ventral division medial geniculate body, marginal zone primary auditory cortex secondary auditory cortex, dorsal area secondary auditory cortex, ventral area auditory radiation ventral cochlear nucleus, anterior part ventral cochlear nucleus, posterior part ventral cochlear nucleus, cap area spiral ganglion nucleus sagulum reticular thalamic nucleus, auditory segment