[csee@login-ai convert_test]$ dcm2niix -p y TEST_SUBJECT/
Chris Rorden's dcm2niiX version v1.0.20241211  GCC13.3.0 x86-64 (64-bit Linux)
Found 30 DICOM file(s)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0015
Philips Scaling Values RS:RI:SS = 6.32479:0:0.00304453 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_AX (256x256x160x1)
Note: B0 not the first volume in the series (FSL eddy reference volume is 64)
Warning: Saving 65 DTI gradients. Validate vectors (image slice orientation not reported, e.g. 2001,100B).
Philips Scaling Values RS:RI:SS = 0.823443:0:0.0459858 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_DTI_RG_FS_64dir_w4b0_2x2x2 (128x128x64x65)
Philips Scaling Values RS:RI:SS = 0.800488:0:0.0341843 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_rsfMRI_MB2 (80x80x54x300)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0019
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.45299:0:0.00811969 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_SWI_MIP_TRA (384x384x145x1)
Warning: Philips enhanced DICOMs (hint: export as classic DICOM)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.45299:0:0.00811969 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_t2_fl3d_tra_cs3_swi_highres (384x384x240x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_t2_fl3d_tra_cs3_swi_highres_ph (384x384x240x1)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0010
Error: DICOM incompatible with NIfTI slice orientation varies (issue 894, localizer?) [0 1 0 0 0 -1] != [1 0 0 0 0 -1]
Warning: repeats of first inStackPositionNumber are at different locations (dx = 183.185mm; issue 839)
Warning: Philips enhanced DICOMs (hint: export as classic DICOM)
Philips Scaling Values RS:RI:SS = 1.40171:0:0.013499 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_gre_field_mapping_e1 (80x80x54x1)
Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_gre_field_mapping_e1_ph (80x80x54x1)
Philips Scaling Values RS:RI:SS = 1.40171:0:0.013499 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_gre_field_mapping_e2 (80x80x54x1)
Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_gre_field_mapping_e2_ph (80x80x54x1)
Philips Scaling Values RS:RI:SS = 6.32479:0:0.00304453 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_3D_Brain_VIEW_FLAIR_CS3 (256x256x160x1)
Note: B0 not the first volume in the series (FSL eddy reference volume is 6)
Warning: Saving 7 DTI gradients. Validate vectors (image slice orientation not reported, e.g. 2001,100B).
Philips Scaling Values RS:RI:SS = 1.03761:0:0.0333883 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_DTI_RG_FS_b0_revb0 (128x128x64x7)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0029
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.45299:0:0.00811969 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_SWI_MIP_SAG (384x384x140x1)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0023
Philips Scaling Values RS:RI:SS = 3.45568:0:0.00602752 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_AXa (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.45299:0:0.00811969 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_SWI_MIP_COR (384x384x160x1)
Warning: Philips enhanced DICOMs (hint: export as classic DICOM)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 2.31673:0:0.00612339 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e1 (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e1_real (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e1_imaginary (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e1_ph (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 2.31673:0:0.00612339 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e2 (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e2_real (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e2_imaginary (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e2_ph (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 2.31673:0:0.00612339 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e3 (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e3_real (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e3_imaginary (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e3_ph (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 2.31673:0:0.00612339 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e4 (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e4_real (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 3.34066:-6840:0.00424697 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e4_imaginary (256x256x160x1)
Warning: Unable to distinguish Philips fieldmaps: phase difference, two phase/magnitude, direct fieldmapping.Philips Scaling Values RS:RI:SS = 1.53455:-3142:651.74 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_swi_qsm_e4_ph (256x256x160x1)
Philips Scaling Values RS:RI:SS = 3.45568:0:0.00602752 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_COR (256x256x170x1)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0027
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0030
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0001
Philips Scaling Values RS:RI:SS = 6.32479:0:0.00304453 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_CORa (256x256x170x1)
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0008
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0025
Skipping non-image DICOM: TEST_SUBJECT/DICOM/XX_0005
Philips Scaling Values RS:RI:SS = 3.45568:0:0.00602752 (see PMC3998685)
Convert 1 DICOM as TEST_SUBJECT/ABHC_QC_2024-12-16-ABHC_QC_Dec2024_19_5_MPRAGE_ADNI_CS3 (256x256x160x1)
Conversion required 65.400069 seconds (60.758614 for core code).