open-discussion > How to change labels values
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Mar 14, 2019 02:03 PM | eng
How to change labels values
I have MRI images with labels 20 ,30 ,40 . I need to change the
labels from 20 ,30 ,40 to 1,2,3
Is there any tools to do that...
Is there any tools to do that...
Mar 15, 2019 03:03 PM | Mehran Azimbagirad
RE: How to change labels values
Depends on the software that you use. For instance,
in freesurfer
https://surfer.nmr.mgh.harvard.edu/fswik...
in 3DSlicer using Editor
https://www.slicer.org/wiki/Documentatio...
in FSL
https://mandymejia.com/fsl-maths-command...
fslmaths [-dt datatype ] first_input [operations and inputs] output [-odt datatype ]
in your case can be
fslmaths -dt label.nii -div 10 -odt output.nii
fslmath -dt -output.nii -sub 1 -odt output2.nii
At first divided by 10, then subtracted by 1.
in freesurfer
https://surfer.nmr.mgh.harvard.edu/fswik...
in 3DSlicer using Editor
https://www.slicer.org/wiki/Documentatio...
in FSL
https://mandymejia.com/fsl-maths-command...
fslmaths [-dt datatype ] first_input [operations and inputs] output [-odt datatype ]
in your case can be
fslmaths -dt label.nii -div 10 -odt output.nii
fslmath -dt -output.nii -sub 1 -odt output2.nii
At first divided by 10, then subtracted by 1.