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Feb 15, 2020 05:02 PM | nadiak
Error during preprocessing
Hello, I am trying to run my anatomical and
functional images through the default preprocessing pipeline, but I
keep getting this error message:
SPM12: spm_realign (v7141)
========================================================================
Warning: Matrix is singular to working precision.
> In spm_realign>save_parameters (line 538)
In spm_realign (line 156)
In spm_run_realignunwarp (line 78)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1717)
In cfg_util (line 972)
In spm_jobman>fill_run_job (line 469)
In spm_jobman (line 247)
In conn_setup_preproc (line 2566)
In conn (line 1081)
In conn_menumanager (line 120)
SPM12: spm_realign (v7141)
========================================================================
Warning: Matrix is singular to working precision.
> In spm_realign>save_parameters (line 538)
In spm_realign (line 156)
In spm_run_realignunwarp (line 78)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1717)
In cfg_util (line 972)
In spm_jobman>fill_run_job (line 469)
In spm_jobman (line 247)
In conn_setup_preproc (line 2566)
In conn (line 1081)
In conn_menumanager (line 120)
14-Feb-2020 23:04:56 - Failed 'Realign &
Unwarp'
Error using chol
Matrix must be positive definite.
Error using chol
Matrix must be positive definite.
It seems to run for a few more iterations and
then it says:
Error using MATLABbatch system
Job execution failed. The full log of this
run can be found in MATLAB command window, starting with the lines
(look for the line showing the exact #job as displayed in this
error message)
------------------
Running job #1
------------------
CONN18.b
SPM12 + DEM FieldMap MEEGtools
Matlab v.2018b
project: CONN18.b
storage: 48.8Gb available
Can anyone help me out with this issue? Thanks
so much!
Feb 16, 2020 01:02 PM | Alfonso Nieto-Castanon - Boston University
RE: Error during preprocessing
Hi Nadiak,
This may indicate that your original functional files have some unexpected dimensionality (either it is not really a BOLD acquisition file or it may be somehow corrupted). Could you please check in the Setup.functionals tab your current functional files, hover over them and let me know their dimensions? (e.g. it should look something like the attached example screenshot, where the dimensions are 72x72x47 voxels and 119 timepoints)
Thanks
Alfonso
Originally posted by nadiak:
This may indicate that your original functional files have some unexpected dimensionality (either it is not really a BOLD acquisition file or it may be somehow corrupted). Could you please check in the Setup.functionals tab your current functional files, hover over them and let me know their dimensions? (e.g. it should look something like the attached example screenshot, where the dimensions are 72x72x47 voxels and 119 timepoints)
Thanks
Alfonso
Originally posted by nadiak:
Hello, I am trying to run my anatomical and
functional images through the default preprocessing pipeline, but I
keep getting this error message:
SPM12: spm_realign (v7141)
========================================================================
Warning: Matrix is singular to working precision.
> In spm_realign>save_parameters (line 538)
In spm_realign (line 156)
In spm_run_realignunwarp (line 78)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1717)
In cfg_util (line 972)
In spm_jobman>fill_run_job (line 469)
In spm_jobman (line 247)
In conn_setup_preproc (line 2566)
In conn (line 1081)
In conn_menumanager (line 120)
SPM12: spm_realign (v7141)
========================================================================
Warning: Matrix is singular to working precision.
> In spm_realign>save_parameters (line 538)
In spm_realign (line 156)
In spm_run_realignunwarp (line 78)
In cfg_run_cm (line 29)
In cfg_util>local_runcj (line 1717)
In cfg_util (line 972)
In spm_jobman>fill_run_job (line 469)
In spm_jobman (line 247)
In conn_setup_preproc (line 2566)
In conn (line 1081)
In conn_menumanager (line 120)
14-Feb-2020 23:04:56 - Failed 'Realign &
Unwarp'
Error using chol
Matrix must be positive definite.
Error using chol
Matrix must be positive definite.
It seems to run for a few more iterations and
then it says:
Error using MATLABbatch system
Job execution failed. The full log of this
run can be found in MATLAB command window, starting with the lines
(look for the line showing the exact #job as displayed in this
error message)
------------------
Running job #1
------------------
CONN18.b
SPM12 + DEM FieldMap MEEGtools
Matlab v.2018b
project: CONN18.b
storage: 48.8Gb available
Can anyone help me out with this issue? Thanks
so much!