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Apr 7, 2020  09:04 AM | petemade
Tissue segmentation atlas
Hi,

I just have a quick question about the tissue segmentation atlas provided in the "Documents" page: How was the tissue segmentation atlas created? Along these lines, is it necessary that the tissue segmentation atlas be in .mha format when inputted into Auto_EACSF?

Thanks,
Maddy
Apr 13, 2020  01:04 PM | Martin Styner
RE: Tissue segmentation atlas
Originally posted by petemade:
Hi,

I just have a quick question about the tissue segmentation atlas provided in the "Documents" page: How was the tissue segmentation atlas created? Along these lines, is it necessary that the tissue segmentation atlas be in .mha format when inputted into Auto_EACSF?

Thanks,
Maddy
The tissue segmentation atlas does not need to be in mha format, but I am not sure whether some additional manual modifications are necessary if you use something other than the .mha format. The atlas itself is a standard probablistic atlas with image and probabilistic prior maps for your tissue classes (quite similar to the segmentation in SPM).
Martin