help > 1-year-old replication
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Apr 28, 2020  04:04 PM | petemade
1-year-old replication
Hi,

I was attempting to run the provided 1-year-old image through the pipeline on our system (red hat version 7.6) when I encountered the following error:

While running : /zhome/mpeter55/anaconda3/bin/python3
Following error(s) occured :
While running : /zhome/mpeter55/Downloads/Software/Auto_EACSF_v1.4.1_RHL6/bin/ImageMath /zhome/mpeter55/Downloads/Software/Auto_EACSF_v1.4.1_RHL6/bin/ImageMath /fslhome/mpeter55/compute/HCP_trials/replication_1yr/output_1/111111/RigidRegistration/111111_T1_stx.nrrd -outfile /fslhome/mpeter55/compute/HCP_trials/replication_1yr/output_1/111111/SkullStripping/111111_T1_stripped.nrrd -mask /fslhome/mpeter55/compute/HCP_trials/replication_1yr/output_1/111111/SkullStripping/111111_T1_FinalBrainMask.nrrd Following error(s) occured : ExceptionObject caught! itk::ImageFileReaderException (0x26d8750) Location: "unknown" File: /tools/ITK/ITKv4.10.0/ITKv4.10.0_THL64_stat_Release/include/ITK-4.10/itkImageFileReader.hxx Line: 143 Description: Could not create IO object for reading file /fslhome/mpeter55/compute/HCP_trials/replication_1yr/output_1/111111/SkullStripping/111111_T1_FinalBrainMask.nrrd The file doesn't exist. Filename = /fslhome/mpeter55/compute/HCP_trials/replication_1yr/output_1/111111/SkullStripping/111111_T1_FinalBrainMask.nrrd

When I went to the SkullStripping directory, a 111111_T1_stx_FinalBrainMask.nrrd file was present, but not the 1111111_T1_FinalBrainMask.nrrd file that the script was looking for. Are there any ideas as to why this discrepancy exists or how it could be resolved?

I am happy to provide any additional information!

Thanks,
Maddy
Jun 16, 2020  02:06 PM | Juan Prieto - NIRAL
RE: 1-year-old replication
Hello, 

Version 1.7.5 was released.
This bug is fixed in this release. 

Best,