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Aug 5, 2020 03:08 PM | hangzhang
Preprocessing error
Dear Alfonso and forum,
When I use the conn to preprocess 6 subjects, it works well. BUT when I try to preprocess 127 subjects together,the MATLAB went crash. The error code is shown in the pictures.
And I also wonder if I preprocess the subjects in batches(n=10), how can I integrate the prprocessed files(n=127) together and skip the preprocessing step? Shoud I just put the new formed preprocessed files in the orginal folders together and move them in a new folder?
Looking forward to your reply!
Thank you!
When I use the conn to preprocess 6 subjects, it works well. BUT when I try to preprocess 127 subjects together,the MATLAB went crash. The error code is shown in the pictures.
And I also wonder if I preprocess the subjects in batches(n=10), how can I integrate the prprocessed files(n=127) together and skip the preprocessing step? Shoud I just put the new formed preprocessed files in the orginal folders together and move them in a new folder?
Looking forward to your reply!
Thank you!
Aug 6, 2020 03:08 PM | Alfonso Nieto-Castanon - Boston University
RE: Preprocessing error
Dear hangzhang
When preprocessing your subjects you may simply select the option that reads "queue / script it (save as scripts to be run later)", and then enter the number of batches that you would like to break your dataset into (e.g. 13, so that each batch has around 10 subjects). That will create 13 scripts that you may run at any time point or in any order, each processing a different bath. When all of them have been run, simply load again your original CONN project, and that wiill automatically import the results from those batches.
Hope this helps
Alfonso
Originally posted by hangzhang:
When preprocessing your subjects you may simply select the option that reads "queue / script it (save as scripts to be run later)", and then enter the number of batches that you would like to break your dataset into (e.g. 13, so that each batch has around 10 subjects). That will create 13 scripts that you may run at any time point or in any order, each processing a different bath. When all of them have been run, simply load again your original CONN project, and that wiill automatically import the results from those batches.
Hope this helps
Alfonso
Originally posted by hangzhang:
Dear Alfonso and forum,
When I use the conn to preprocess 6 subjects, it works well. BUT when I try to preprocess 127 subjects together,the MATLAB went crash. The error code is shown in the pictures.
And I also wonder if I preprocess the subjects in batches(n=10), how can I integrate the prprocessed files(n=127) together and skip the preprocessing step? Shoud I just put the new formed preprocessed files in the orginal folders together and move them in a new folder?
Looking forward to your reply!
Thank you!
When I use the conn to preprocess 6 subjects, it works well. BUT when I try to preprocess 127 subjects together,the MATLAB went crash. The error code is shown in the pictures.
And I also wonder if I preprocess the subjects in batches(n=10), how can I integrate the prprocessed files(n=127) together and skip the preprocessing step? Shoud I just put the new formed preprocessed files in the orginal folders together and move them in a new folder?
Looking forward to your reply!
Thank you!
Aug 11, 2020 02:08 PM | hangzhang
RE: Preprocessing error
Thanks for your reply,
But when I finish the "setup" step and press "done", the matlab crash again!!! I am very confused about it as it crashed eveytime when it showed"importing the functional data" !What can I do, dear Aldonso? I have updated the conn toolbox from 18b to 19c and have tried them on MATLAB 2018b and 2017a. Sadly, none of them worked well. Everytime when it crashed, it always said that "Crash Decoding: Disabled - No sandbox or build area path" and "The error was detected while a MEX-file was running." The crashing code picture was attached in the file. Please tell me what else can I do? If I can't solve this problem, i will not be able to enter the next "DENOISING"step.
Looking forward to your reply soon.
But when I finish the "setup" step and press "done", the matlab crash again!!! I am very confused about it as it crashed eveytime when it showed"importing the functional data" !What can I do, dear Aldonso? I have updated the conn toolbox from 18b to 19c and have tried them on MATLAB 2018b and 2017a. Sadly, none of them worked well. Everytime when it crashed, it always said that "Crash Decoding: Disabled - No sandbox or build area path" and "The error was detected while a MEX-file was running." The crashing code picture was attached in the file. Please tell me what else can I do? If I can't solve this problem, i will not be able to enter the next "DENOISING"step.
Looking forward to your reply soon.