There is an error in FDR calculation at https://www.sdmproject.com/utilities/?sh... .

If you paste numbers:
0.001052588
0.002887613
0.004249
0.2431061
0.4909836
0.589325

The q-value 0.008498 will appear in the output twice.

Similarly, if you paste numbers:
6.80E-08
8.26E-08
2.86E-07
4.45E-07
1.09E-06
0.001052588
0.002887613
0.004249
0.2431061
0.4909836
0.589325

The q-value 4.543e-07 will appear twice.

Dear Mikhail

R returns the same FDRs:

[1] 0.006315528 0.008498000 0.008498000 0.364659150 0.589180320 0.589325000

[1] 4.543000e-07 4.543000e-07 1.048667e-06 1.223750e-06 2.398000e-06 1.929745e-03 4.537678e-03 5.842375e-03 2.971297e-01 5.400820e-01 5.893250e-01

With best wishes,

Joaquim

Thank you, that's my fault. I compared the results on this site with the results on https://tools.carbocation.com/FDR and observed a difference. It appears that the bug is in their algorithm, not yours.