open-discussion > Improving visualization of clusters in MRIcroGL - Finding corresponding AFNI colormap "Reds_and_blues_Inv" in MRIcroGL?
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Jul 10, 2024  04:07 PM | benedetta cecconi
Improving visualization of clusters in MRIcroGL - Finding corresponding AFNI colormap "Reds_and_blues_Inv" in MRIcroGL?

Hello,


I have completed an analysis in Afni, where my clusters are clearly rendered in their GUI with distinct red and blue colors (colormap "Reds_and_Blues_Inv") - see the attached picture "precuneus":



However, when I plot these clusters in MRIcroGL to have nicer definition/view etc, I can't find a suitable colormap or method to enhance the colors effectively and show the clusters nicely. Clusters look grainy/blurred and the final image is either elegant nor clear, even if this mosaic view would be very nice to visualize our results: