Hi all,
First of, thanks for the wonderful package. I have been stuck with this problem and I hope you guys can guide me to the right direction. I have the cortical thickness file (eg: brain_n31_iso_clone1_gm_cp_innerlevset_levelset.raw) that I got from CRUISE, I also have the label file (eg: OAS1_0130_ctxlabel_axial_labels_extend_clone_transform_def_3.raw). Now, how do I use both of them to get average cortical thickness for each individual label. When I try to overlay the label file on the thickness file they don't match. Aren't the label file and thickness file both in subject space? I hope I have clearly explained the problem I am facing.

Thanks,
Binod