open-discussion > Bioimage suite: objectmap statistics
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Oct 5, 2011 08:10 AM | Eero Hippeläinen
Bioimage suite: objectmap statistics
Hi every1!
I'm trying to do some very basic VOi analysis of SPECT images. I'm currenyly using object maps with three different volumes. I register SPECT images with template and run VOI Volume / Stats computation from object map dropdown menu (transform window in brain register). This way I can get some statistics like mean, std, max and volumes. But I would like to have bit more like sum of voxel values and min values.
The Question is: Can I have more statistics of VOI some how? if yes, please help me out. I can do some coding so I'm not afraid to dive deep in to the program.
Thank you!
Eero
I'm trying to do some very basic VOi analysis of SPECT images. I'm currenyly using object maps with three different volumes. I register SPECT images with template and run VOI Volume / Stats computation from object map dropdown menu (transform window in brain register). This way I can get some statistics like mean, std, max and volumes. But I would like to have bit more like sum of voxel values and min values.
The Question is: Can I have more statistics of VOI some how? if yes, please help me out. I can do some coding so I'm not afraid to dive deep in to the program.
Thank you!
Eero
Oct 5, 2011 08:10 AM | Eero Hippeläinen
RE: Bioimage suite: objectmap statistics
Foolish me!
Of course I can get sum of voxel values, but how about min value... also it would be nice to do some simple calculations with the values.
thanks
Eero
Of course I can get sum of voxel values, but how about min value... also it would be nice to do some simple calculations with the values.
thanks
Eero
Oct 7, 2011 05:10 AM | Xenophon Papademetris
RE: Bioimage suite:
objectmap statistics
We don't have min value unfortunately programmed in. You should be
able to get max value though, so multiple your image by -1 and try
again.
Xenios
Xenios