open-discussion > Dicom to NIFTI
Showing 1-9 of 9 posts
Dec 27, 2011 12:12 PM | Andrés Larroza
Dicom to NIFTI
Hello,
I am using the Dicom to NIFTL converter of the latest BioImage version but I have this error when loading my DICOM data:
**************************************************************
ERROR: In ..\..\Common\vtkbisGDCMImageReader.cpp, line 601
vtkbisDICOMReader (05854E10): ImageReader failed
ERROR: In ..\..\Common\vtkbisGDCMImageReader.cpp, line 501
vtkbisDICOMReader (05854E10): RequestInformationCompat failed: 0
ERROR: In ..\..\..\build\vtk52\Filtering\vtkExecutive.cxx, line 757
vtkStreamingDemandDrivenPipeline (05837D58): Algorithm vtkbisDICOMReader(05854E10) returned failure for request: vtkInformation (0581CA10)
Debug: Off
Modified Time: 308
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
********************************************************************************************************
And I used another Dicom to NIFTI converter in order to work with my DTI data, but when I tried to load it in the Diffusion Tensor utility I have a message "This image has only 1 frames", but the file I try to load is a 4D DWI data, so there are more than 1 frame, I could work with it in other DTI software packages.
Please if someone can help me with this two issues.
Thanks.
I am using the Dicom to NIFTL converter of the latest BioImage version but I have this error when loading my DICOM data:
**************************************************************
ERROR: In ..\..\Common\vtkbisGDCMImageReader.cpp, line 601
vtkbisDICOMReader (05854E10): ImageReader failed
ERROR: In ..\..\Common\vtkbisGDCMImageReader.cpp, line 501
vtkbisDICOMReader (05854E10): RequestInformationCompat failed: 0
ERROR: In ..\..\..\build\vtk52\Filtering\vtkExecutive.cxx, line 757
vtkStreamingDemandDrivenPipeline (05837D58): Algorithm vtkbisDICOMReader(05854E10) returned failure for request: vtkInformation (0581CA10)
Debug: Off
Modified Time: 308
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
ALGORITHM_AFTER_FORWARD: 1
FORWARD_DIRECTION: 0
********************************************************************************************************
And I used another Dicom to NIFTI converter in order to work with my DTI data, but when I tried to load it in the Diffusion Tensor utility I have a message "This image has only 1 frames", but the file I try to load is a 4D DWI data, so there are more than 1 frame, I could work with it in other DTI software packages.
Please if someone can help me with this two issues.
Thanks.
Jan 5, 2012 04:01 PM | Xenophon Papademetris
Dicom to NIFTI
Our DICOM conversion is far from perfect unfortunately, try looking
online for another tool. The Slicer folks have been doing a lot of
work in this area.
Xenios
Xenios
Jan 6, 2012 12:01 PM | Andrés Larroza
RE: Dicom to NIFTI
Ok, I used MRIconvert and dcm2nii, but my problem now is that when
I try to load my DTI data in the Diffusion Tensor utility I have a
message
"This image has only 1 frames", but the file I try to load is a 4D
DWI data, so there are more than 1 frame. Same thing with both converters.
"This image has only 1 frames", but the file I try to load is a 4D
DWI data, so there are more than 1 frame. Same thing with both converters.
Jan 6, 2012 09:01 PM | Xenophon Papademetris
RE: Dicom to NIFTI
Hmm ... if you could use the yale file transfer system (http://transfer.med.yale.edu) (or some other mechanism) to send me one of these files (the
.nii.gz version) I can take a look and see what it looks like.
Xenios
Xenios
Jan 17, 2012 12:01 AM | Andrés Larroza
RE: Dicom to NIFTI
I don't have access to the Yale Secure File Transfer. I read that
any non-Yale individual can transfer files to a member of the Yale
community once access has been granted by the Yale recipient. How
can I do this? May I transfer you the file via Dropbox for example?
Thanks
Thanks
Jan 17, 2012 05:01 PM | Xenophon Papademetris
RE: Dicom to NIFTI
Dropbox is fine ... (xpapademetris@gmail.com)
Jan 17, 2012 06:01 PM | Andrés Larroza
RE: Dicom to NIFTI
Ok, I shared a folder name 4198 with the file. I have same problem
with all my data.
Thanks.
Thanks.
May 3, 2012 11:05 AM | Andrés Larroza
RE: Dicom to NIFTI
Hello,
Did you manage to work with the data I transfered to you?
I still have the same problem.
Andrés
Did you manage to work with the data I transfered to you?
I still have the same problem.
Andrés
May 3, 2012 04:05 PM | Xenophon Papademetris
RE: Dicom to
NIFTI
Andres,
I am not sure I remember -- I apologize. Could you please try sending me data again. I remember looking at something but beyond that I am not sure.
Xenios
I am not sure I remember -- I apologize. Could you please try sending me data again. I remember looking at something but beyond that I am not sure.
Xenios