open-discussion > extractB0 job failed
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Mar 14, 2013 09:03 PM | Sneha Pandya
extractB0 job failed
Hello Zaixu,
'extractBO' job failed to run. I did go through the log, but unable to find out what may go wrong. I have attached my entire output folder, which contains the log folder as well as '.PANDA' file. Can you please help me on this.
Thanks,
Sneha
'extractBO' job failed to run. I did go through the log, but unable to find out what may go wrong. I have attached my entire output folder, which contains the log folder as well as '.PANDA' file. Can you please help me on this.
Thanks,
Sneha
Mar 15, 2013 09:03 AM | Zaixu Cui
RE: extractB0 job failed
Dear Sneha,
I think this is the problem of fsl.
Please download fsl in http://www.fmrib.ox.ac.uk/fsldownloads/.
Don't download Linux Debian/Ubuntu version, please download Linux Centos version and install.
Follow the installation instruction here.
http://hi.baidu.com/heart_eternal/item/3...
If this doesn't work, please contact me.
Best
Zaixu
I think this is the problem of fsl.
Please download fsl in http://www.fmrib.ox.ac.uk/fsldownloads/.
Don't download Linux Debian/Ubuntu version, please download Linux Centos version and install.
Follow the installation instruction here.
http://hi.baidu.com/heart_eternal/item/3...
If this doesn't work, please contact me.
Best
Zaixu
Mar 21, 2013 08:03 PM | Sneha Pandya
RE: extractB0 job failed
Hi Zaixu,
Sorry for getting back late to you. I installed new version of fsl as mentioned, yet it showed me job failed for extractBO step.
I went through the log files again but am unable to figure out what is going wrong. Attached is the log file for the new session that I ran.
Thanks,
Sneha
Sorry for getting back late to you. I installed new version of fsl as mentioned, yet it showed me job failed for extractBO step.
I went through the log files again but am unable to figure out what is going wrong. Attached is the log file for the new session that I ran.
Thanks,
Sneha
Mar 22, 2013 12:03 AM | Zaixu Cui
RE: extractB0 job failed
Dear Sneha,
There is a folder named 'logs' in the result path.
Please attach this folder here. I will know what is wrong.
Best
Zaixu
There is a folder named 'logs' in the result path.
Please attach this folder here. I will know what is wrong.
Best
Zaixu
Mar 22, 2013 05:03 PM | Sneha Pandya
RE: extractB0 job failed
Hi Zaixu,
Kindly find the attached log folder.
Thanks,
Sneha
Kindly find the attached log folder.
Thanks,
Sneha
Mar 23, 2013 04:03 AM | Zaixu Cui
RE: extractB0 job failed
Dear Sneha,
The error is as listed:
fslroi: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory
extracting b0 image is done!
It seemed that a file named libnewimage.so is missing in your system.
First, I think you should delete all files of old ubuntu version FSL.
Second, What's your system? Ubuntu? If it is Ubuntu, I think you can upgrade it to Ubuntu new version, such as Ubuntu 12.04, 12.10.
You can have a try first.
If you still have any problems, please don't hesitate to contact me.
Best
Zaixu
The error is as listed:
fslroi: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory
extracting b0 image is done!
It seemed that a file named libnewimage.so is missing in your system.
First, I think you should delete all files of old ubuntu version FSL.
Second, What's your system? Ubuntu? If it is Ubuntu, I think you can upgrade it to Ubuntu new version, such as Ubuntu 12.04, 12.10.
You can have a try first.
If you still have any problems, please don't hesitate to contact me.
Best
Zaixu