The pyClusterROI python library for the spatially constrained normalized-cut parcellation has been updated to use nibabel, to use the more recent versions of scipy, and to add a script to name regions based on various atlases. The code has been moved to a github repository: https://github.com/ccraddock/cluster_roi, and there is now a new webpage with more detailed information: http://ccraddock.github.io/cluster_roi/. I would like to thank everyone who have used and commented on pyClusterROI and Krishna Somandepalli for his code modications.

-cameron

Dear Cameron,

What version of numpy/scipy is compatible with the latest pyCluster release found on GitHub? I keep getting an error from csc_matrix() saying that the row index exceeds matrix dimensions, and this is using the test data provided. Thank you very much!