please.. tell me about exact syntax for robex..

>> runrobex.sh
ROBEX requires at least 2 arguments

?

Hi TYL,
as explained in the documentation, ROBEX requires 2 arguments. The first one is the input file. The second one is the output (stripped) file. If a third argument is provided, it provides the binary brain mask. For example:
runrobex.sh input.nii.gz stripped.nii.gz
or 
runrobex.sh input.nii.gz stripped.nii.gz mask.nii.gz

Hey JEL,

I tried the below command with two arguments but its giving the below error:
"Description: itk::ERROR: MattesMutualInformationImageToImageMetric(0x1fe87d0): Too many samples map outside moving image buffer: 3666 / 65000". I tried with the DICOM files as well but same output is there.

How can I solve this?

Hi again,
have you checked that the brain MRI is correctly oriented? If that's the case; would it be possible to send it to me so I can see what's wrong?
Kind regards,
/Eugenio

Hi, upon thorough researching and reading, I found out that syntax in programming refers to the rules that specify and that define the combinations of symbols that are considered to be syntactically correct programs in that language. To add to it, It may define its text form.

Hi JEL

please find the attached file. I am not that much sure about the orientation.

Dear TYL,
ROBEX requires 3D volumetric data; it does not work for single slices.
Cheers,
/Eugenio