indi > Translating NKI-Rockland IDs
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Jan 30, 2014 03:01 AM | BettyAnn Chodkowski
Translating NKI-Rockland IDs
Dear all,
Might anyone have some knowledge about this?
I downloaded MRI datasets from the NKI-RS Lite Releases:
http://fcon_1000.projects.nitrc.org/indi...
However, I access the phenotype data via the COINS Data Exchange (DX). I used this odd hybrid approach because at the time when I needed the MRI data, there was some problem with the DX. Downloading the MRI data via the Lite site was the suggested work around.
I've written a script to translate the DX URSI ID (eg, A00037375) to the Lite ID (eg, M10910809 --> 0110809). I am unable to convert from URSI to Lite ID for almost all the datasets I've downloaded.
I downloaded the Study Number of all studies via the DX and got 321 records. Of these records, only three contain URSI IDs my cohort of interest, children:
% egrep -i child 3760_Study\ Number_20131222.csv
"A00039866","Child-Age 12","","M10917289"
"A00038706","Child- Age 13","","M10982795"
"A00038603","Child -Age 8","","M10915084"
Perhaps the DX does not have the most recent list of study numbers?
I noticed that the .csv file the DX gives me has a date stamp of '20131222'. Other .csv files have a more recent date stamp of '20140129'.
Might anyone have some insight into this? If this helps, two DX URSI IDs that I cannot find in the 'Study Number' .csv file provided by the DX are:
A00018030
A00027159
Thank you,
- BettyAnn
Might anyone have some knowledge about this?
I downloaded MRI datasets from the NKI-RS Lite Releases:
http://fcon_1000.projects.nitrc.org/indi...
However, I access the phenotype data via the COINS Data Exchange (DX). I used this odd hybrid approach because at the time when I needed the MRI data, there was some problem with the DX. Downloading the MRI data via the Lite site was the suggested work around.
I've written a script to translate the DX URSI ID (eg, A00037375) to the Lite ID (eg, M10910809 --> 0110809). I am unable to convert from URSI to Lite ID for almost all the datasets I've downloaded.
I downloaded the Study Number of all studies via the DX and got 321 records. Of these records, only three contain URSI IDs my cohort of interest, children:
% egrep -i child 3760_Study\ Number_20131222.csv
"A00039866","Child-Age 12","","M10917289"
"A00038706","Child- Age 13","","M10982795"
"A00038603","Child -Age 8","","M10915084"
Perhaps the DX does not have the most recent list of study numbers?
I noticed that the .csv file the DX gives me has a date stamp of '20131222'. Other .csv files have a more recent date stamp of '20140129'.
Might anyone have some insight into this? If this helps, two DX URSI IDs that I cannot find in the 'Study Number' .csv file provided by the DX are:
A00018030
A00027159
Thank you,
- BettyAnn
May 19, 2016 02:05 PM | Vivian Roger Steiger
RE: Translating NKI-Rockland IDs
Hi Betty,
Have you found a solution for this I'm running into the same problems...
Best,
viv
Have you found a solution for this I'm running into the same problems...
Best,
viv