hi I was following the steps written on "Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM", I noticed that there are some minor differences from the current PDM version. I hope to know if I can input .gipl files for commands SegPostProcess and GenParaMesh, because i know i can use .gipl in windows(.exe) version. If i can get some examples, that will be great. Thanks.

Dear Shan,


We have descriptions of commandline syntax in the MediaWiki: https://www.nitrc.org/plugins/mwiki/inde...

Please, do let me know if that helps.
Best regards,

Beatriz

Hi Beatriz,

Thanks for the reply. However, the pipeline I hope to set up is to use .gipl files(topology fixed) as input files, to generate .meta files, then use these meta files to generate .smo files. I compared your current version with the previous one, and I found the header information are changed 

For previous one is:

1: ObjectType = Sceneabcdefgh
2: NDims = 3abcdefgh
3: NObjects = 1abcdefgh
4: ObjectType = Meshabcdefgh
5: NDims = 3abcdefgh
6: BinaryData = Falseabcdefgh
7: TransformMatrix = 1 0 0 0 1 0 0 0 1abcdefgh
8: Offset = 0 0 0abcdefgh
9: CenterOfRotation = 0 0 0abcdefgh
10: ElementSpacing = 1 1 1abcdefgh
11: PointType = MET_FLOATabcdefgh
12: PointDataType = MET_FLOATabcdefgh
13: CellDataType = MET_FLOATabcdefgh
14: NCellTypes = 1abcdefgh
15: PointDim = ID x y ...abcdefgh

current one:

1: # vtk DataFile Version 3.0abcdefgh
2: vtk outputabcdefgh
3: ASCIIabcdefgh
4: DATASET POLYDATAabcdefgh
5: POINTS 2440 floatabcdefgh
6: -9 -35 3 -10 -35 3 -9 -36 3 abcdefgh
7: -10 -36 3 -11 -36 3 -12 -36 3 abcdefgh
8: -9 -37 3 -10 -37 3 -11 -37 3 abcdefgh
9: -12 -37 3 -13 -37 3 -9 -38 3 abcdefgh
10: -10 -38 3 -11 -38 3 -12 -38 3 abcdefgh
11: -13 -38 3 -14 -38 3 -15 -38 3 abcdefgh
12: -10 -39 3 -11 -39 3 -12 -39 3 abcdefgh
13: -13 -39 3 -14 -39 3 -15 -39 3 abcdefgh
14: -7 -33 4 -8 -33 4 -7 -34 4 abcdefgh
15: -8 -34 4 -9 -34 4 -10 -34 4 abcdefgh
16: -11 -34 4 -12 -34 4 -7 -35 4 abcdefgh
17: -8 -35 4 -9 -35 4 -10 -35 4 abcdefgh
18: -11 -35 4 -12 -35 4 -13 -35 4 abcdefgh
19: -8 -36 4 -9 -36 4 -10 -36 4 abcdefgh
20: -11 -36 4 -12 -36 4 -13 -36 4 abcdefgh

I run the previous one on Win sys, but now i hope to run it on Linux with same input and output format as I mentioned above. Thanks.

Originally posted by Beatriz Paniagua: