Dear experts,

In our lab we have create a MNI atlas which I want to integrate in your software.
I read your manual, and I succeeded to create files in a specific directory different from 'human atlas'.
This can be used in the results section of SPM8.
It can also be used in the section of your software where localization of a voxel is done according to its coordinates (cub or MNI or TAL).

I integrated the files (new_atlas.nii and new_atlas.txt) in the directory 'MNI_atlas_templates". I changed the 'master_lookup' in that directory : new_atlas,new_atlas.nii,new_atlas.txt,6000
This can be used in the results section of SPM8.

but when I use pickatlas for localization of a voxel in different atlases according to its coordinates (see attached), there is an error:

15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas.m | MException thrown. Stack follows:
15-Oct-2014 10:17:05 | FATAL | Atlas1Menu_Callback | Line 1580: Index exceeds matrix dimensions.
15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas | Line 0110
15-Oct-2014 10:17:05 | FATAL | @(hObject,eventdata)wfu_pickatlas('Atlas1Menu_Callback',hObject,eventdata,guidata(hObject)) | Line 0000

this also occur with the atlas IBASPM116

MATLAB Version 7.6.0.324 (R2008a)
SPM8 Version 5236
on windows.

Do you have ideas ???
Thank you for your help...

Isabelle

Dear Isabelle,
  A very interesting bug.  Thanks for finding it.  Please find attached an updated wfu_pickatlas.m for the PickaAtlas 3.0.4.  Please place this in the wfu_pickatlas directory overwriting the existing file.

Please let me know if you have any more questions or problems,
Ben

Thank you Ben !
it works.
Have a nice day.
Isabelle