help > Insert atlas in 'Human Atlases'
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Oct 15, 2014 08:10 AM | Isabelle Faillenot - university of Saint-Etienne (UJM)
Insert atlas in 'Human Atlases'
Dear experts,
In our lab we have create a MNI atlas which I want to integrate in your software.
I read your manual, and I succeeded to create files in a specific directory different from 'human atlas'.
This can be used in the results section of SPM8.
It can also be used in the section of your software where localization of a voxel is done according to its coordinates (cub or MNI or TAL).
I integrated the files (new_atlas.nii and new_atlas.txt) in the directory 'MNI_atlas_templates". I changed the 'master_lookup' in that directory : new_atlas,new_atlas.nii,new_atlas.txt,6000
This can be used in the results section of SPM8.
but when I use pickatlas for localization of a voxel in different atlases according to its coordinates (see attached), there is an error:
15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas.m | MException thrown. Stack follows:
15-Oct-2014 10:17:05 | FATAL | Atlas1Menu_Callback | Line 1580: Index exceeds matrix dimensions.
15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas | Line 0110
15-Oct-2014 10:17:05 | FATAL | @(hObject,eventdata)wfu_pickatlas('Atlas1Menu_Callback',hObject,eventdata,guidata(hObject)) | Line 0000
this also occur with the atlas IBASPM116
MATLAB Version 7.6.0.324 (R2008a)
SPM8 Version 5236
on windows.
Do you have ideas ???
Thank you for your help...
Isabelle
In our lab we have create a MNI atlas which I want to integrate in your software.
I read your manual, and I succeeded to create files in a specific directory different from 'human atlas'.
This can be used in the results section of SPM8.
It can also be used in the section of your software where localization of a voxel is done according to its coordinates (cub or MNI or TAL).
I integrated the files (new_atlas.nii and new_atlas.txt) in the directory 'MNI_atlas_templates". I changed the 'master_lookup' in that directory : new_atlas,new_atlas.nii,new_atlas.txt,6000
This can be used in the results section of SPM8.
but when I use pickatlas for localization of a voxel in different atlases according to its coordinates (see attached), there is an error:
15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas.m | MException thrown. Stack follows:
15-Oct-2014 10:17:05 | FATAL | Atlas1Menu_Callback | Line 1580: Index exceeds matrix dimensions.
15-Oct-2014 10:17:05 | FATAL | wfu_pickatlas | Line 0110
15-Oct-2014 10:17:05 | FATAL | @(hObject,eventdata)wfu_pickatlas('Atlas1Menu_Callback',hObject,eventdata,guidata(hObject)) | Line 0000
this also occur with the atlas IBASPM116
MATLAB Version 7.6.0.324 (R2008a)
SPM8 Version 5236
on windows.
Do you have ideas ???
Thank you for your help...
Isabelle
Oct 16, 2014 01:10 PM | Benjamin Wagner - UT Southwestern Medical Center
RE: Insert atlas in 'Human Atlases'
Dear Isabelle,
A very interesting bug. Thanks for finding it. Please find attached an updated wfu_pickatlas.m for the PickaAtlas 3.0.4. Please place this in the wfu_pickatlas directory overwriting the existing file.
Please let me know if you have any more questions or problems,
Ben
A very interesting bug. Thanks for finding it. Please find attached an updated wfu_pickatlas.m for the PickaAtlas 3.0.4. Please place this in the wfu_pickatlas directory overwriting the existing file.
Please let me know if you have any more questions or problems,
Ben
Oct 16, 2014 02:10 PM | Isabelle Faillenot - university of Saint-Etienne (UJM)
RE: Insert atlas in 'Human Atlases'
Thank you Ben !
it works.
Have a nice day.
Isabelle
it works.
Have a nice day.
Isabelle