open-discussion > Import of the data from SPM to Bioimage Suite
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Feb 16, 2015 09:02 AM | Olga Dobrushina
Import of the data from SPM to Bioimage Suite
Hi,
I am trying to load resting state fcMRI data, that were prepocessed in SPM 8, to Bioimage Suite - to the single subject fMRI tool. The problem is that Bioimage asks for "Reference Transform" (.grd), "Internal Transform" (.matr) and "Distortion Transform" (.matr) in the tab "Anatomical data". And there are no such files after the preprocessing in SPM.
Should I redo the preprocessing with Bioimage (or AFNI?) or there is some way to import the data from SPM to Bioimage?
Many thanks,
Olga
I am trying to load resting state fcMRI data, that were prepocessed in SPM 8, to Bioimage Suite - to the single subject fMRI tool. The problem is that Bioimage asks for "Reference Transform" (.grd), "Internal Transform" (.matr) and "Distortion Transform" (.matr) in the tab "Anatomical data". And there are no such files after the preprocessing in SPM.
Should I redo the preprocessing with Bioimage (or AFNI?) or there is some way to import the data from SPM to Bioimage?
Many thanks,
Olga
Jan 22, 2018 04:01 PM | vania karami
RE: Import of the data from SPM to Bioimage Suite
Hello
Can I ask you a question? I am new in this field and I try to use SPM for preprocessing of MRI data of OASIS database. Each time I use SPM for different preprocessing it gets the original images and gives me one new output (I expect to give original image for first step and the results of this for second step and... finally I have one output). SO what is the exact output for me to do processing on it?
Thanks a lot
Can I ask you a question? I am new in this field and I try to use SPM for preprocessing of MRI data of OASIS database. Each time I use SPM for different preprocessing it gets the original images and gives me one new output (I expect to give original image for first step and the results of this for second step and... finally I have one output). SO what is the exact output for me to do processing on it?
Thanks a lot