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Nov 17, 2015 09:11 AM | Nabila BRIHMAT - Kessler Foundation
Save each series in separate directories
Hi experts,
I'm sorry if the question has already been answered but I am a beginner in using dcm2nii to convert my files. My data is stored in a CD-ROM and it contains the resting-state, activation and DTI data for each of my subject; So is it possible to save each series of my converted data (output files) in separate directories like MRIconvert do?
Thanks for your answer,
Nabila
I'm sorry if the question has already been answered but I am a beginner in using dcm2nii to convert my files. My data is stored in a CD-ROM and it contains the resting-state, activation and DTI data for each of my subject; So is it possible to save each series of my converted data (output files) in separate directories like MRIconvert do?
Thanks for your answer,
Nabila
Nov 30, 2015 08:11 PM | Chris Rorden
RE: Save each series in separate directories
No, you could have it put these details into the file name, but not
the directories. General usage is described here
https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage
and the source code is here
https://github.com/neurolabusc/dcm2niix
so you are free to modify it as you wish. I think both Jolinda's MRIconvert and Xiangrui's dicm2nii are excellent tools, so choose the one that best serves your needs.
-c
https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage
and the source code is here
https://github.com/neurolabusc/dcm2niix
so you are free to modify it as you wish. I think both Jolinda's MRIconvert and Xiangrui's dicm2nii are excellent tools, so choose the one that best serves your needs.
-c