open-discussion > Dicom to Nifti / dcm2niix / Slice timing
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Nov 27, 2016  04:11 AM
Dicom to Nifti / dcm2niix / Slice timing
Dear all,

is it possible to include DICOM slice time information (from Siemens MR) in Nifti file header? It might be possible with dcm2niix but I might have missed the right flag. Any advice is highly appreciated, thank you.
Christian
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May 27, 2017  04:05 AM
RE: Dicom to Nifti / dcm2niix / Slice timing
Hello-
 dcm2niix with put the Siemens slice order information into the NIfTI slice_order tag. An exception to this is if your data was acquired with multiband, where the slice order can not be completely described by the 6 slice order options
 http://www.mccauslandcenter.sc.edu/crnl/tools/stc
In this case, you can look at the "SliceTiming" field of the BIDS json header to determine the order.
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