open-discussion > Error BioimageSuite Mac OS Sierra 10.12.1
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Dec 8, 2016  12:12 PM | Tom Bugnon
Error BioimageSuite Mac OS Sierra 10.12.1
Dear Bioimage Suite developers.
I receive an error when trying to launch bioimagesuite since I changed computer:

BioimageSuite3_Base is now in your path
Key Components
/Applications/bioimagesuite3_base/cmake26/bin/cmake
/Applications/bioimagesuite3_base/tcl84_x11/bin/tclsh
/Applications/bioimagesuite3_base/vtk52/bin/vtk
/Applications/bioimagesuite3_base/gdcm2/bin/gdcminfo
CLAPACK in /Applications/bioimagesuite3_base/clapack3
ITK in /Applications/bioimagesuite3_base/itk310/lib/InsightToolkit
MYSQL in /Applications/bioimagesuite3_base/mysql50
BioimageSuite ready to run. Type bis.tcl to get the starting menu (/Applications/bioimagesuite30)
dyld: Library not loaded: libvtkVolumeRenderingTCL.5.2.dylib
Referenced from: /Applications/bioimagesuite3_base/vtk52/bin/vtk
Reason: image not found
start_bioimagesuite: line 20: 5343 Abort trap: 6 bis.tcl



I believe it is the same error than in a different thread for OS 10.12.
I tried several versions available on the website without success.
Thanks for your help.
Tom
Dec 8, 2016  12:12 PM | Xenophon Papademetris
Error BioimageSuite Mac OS Sierra 10.12.1
The old version (from the website) will not work on newer Macs unfortunately. You may want to try the "internal" version from https://www.dropbox.com/sh/i5ed09aa1qvtg...
Dec 8, 2016  12:12 PM | Tom Bugnon
RE: Error BioimageSuite Mac OS Sierra 10.12.1
it worked perfectly nice. Many thanks for the super fast answer.
Jan 10, 2017  02:01 PM | steph bickel
RE: Error BioimageSuite Mac OS Sierra 10.12.1
Hi,
sorry to bug with the same problem. I had it before on a previous version of OSX and installing BIS from the dropbox link you provided fixed it. Somehow it did not this time. BIS gives me this error when trying to start it on OSX 10.12.2:

BioimageSuite3_Base is now in your path
Key Components
/usr/local/bioimagesuite3_base/cmake26/bin/cmake
/usr/local/bioimagesuite3_base/tcl84_x11/bin/tclsh
/usr/local/bioimagesuite3_base/vtk52/bin/vtk
/usr/local/bioimagesuite3_base/gdcm2/bin/gdcminfo
CLAPACK in /usr/local/bioimagesuite3_base/clapack3
ITK in /usr/local/bioimagesuite3_base/itk310/lib/InsightToolkit
MYSQL in /usr/local/bioimagesuite3_base/mysql50
BioimageSuite ready to run. Type bis.tcl to get the starting menu (/usr/local/bioimagesuite30)
dyld: Library not loaded: libvtkVolumeRenderingTCL.5.2.dylib
Referenced from: /usr/local/bioimagesuite3_base/vtk52/bin/vtk
Reason: image not found
/usr/local/bis: line 20: 776 Abort trap: 6 bis.tcl

Any thoughts? 

Thank you, 

Stephan
Jan 11, 2017  07:01 AM | Xenophon Papademetris
RE: Error BioimageSuite Mac OS Sierra 10.12.1
You need to install the 3.5 beta version on latest versions on MacOS. The link is here

https://www.dropbox.com/sh/i5ed09aa1qvtg...

It is beta so use with care.
Jan 11, 2017  09:01 AM | steph bickel
RE: Error BioimageSuite Mac OS Sierra 10.12.1
Thank you for your fast response! It works. Stephan
Oct 3, 2017  01:10 AM | Chun-yu Cheng
Error BioimageSuite Mac OS Sierra 10.12.6
Hi~Xenophon

I am new to BIS. 

I'm also facing the similar problem. I use Mac OS Sierra 10.12.6 and down the file mac_bioimagesuite35_base64.zip from your dropbox link. 

However, I still can't instal the BIS. Even tried other files and typed sudo sh ./bioimagesuite_[filename].sh --prefix=/usr/local.

The terminator always shows No such file or directory. 

Shall I need to put the whole files into /usr/local/? 


Thank you very much.
Oct 3, 2017  06:10 AM | Xenophon Papademetris
Error BioimageSuiteMac OS Sierra 10.12.6
Chun-yu,

You downloaded the wrong file - look for the one ending in sh

https://www.dropbox.com/s/4driziuviyou9s...

Xenios
Oct 3, 2017  10:10 AM | Chun-yu Cheng
RE: Error BioimageSuiteMac OS Sierra 10.12.6
Thank you! 

I download the file and type 

sudo sh ./bioimagesuite_[bioimagesuite-35_0b1_06_Apr_2017-MacOS-c++-x86_64].sh --prefix=/usr/local

but it still showed sh: ./bioimagesuite_[bioimagesuite-35_0b1_06_Apr_2017-MacOS-c++-x86_64].sh: No such file or directory

It seems it's not work. Is there anything wrong?
Oct 3, 2017  10:10 AM | Xenophon Papademetris
RE: ErrorBioimageSuiteMac OS Sierra 10.12.6
Rename the file to something like bis.sh and try sudo sh ./bis.sh -prefix=/usr/local

The [] in the name are giving you trouble.
Oct 3, 2017  01:10 PM | Chun-yu Cheng
RE: ErrorBioimageSuiteMac OS Sierra 10.12.6
Thank you. The installation is done. 
But how do I launch the BIS?
When I open the start_bioimagesuite, it shows

Application initialization failed: no display name and no $DISPLAY environment variable
Error in startup script: no display name and no $DISPLAY environment variable
while executing
"load /Users/chengrick/Desktop/bioimagesuite35/lib/libtk8.5.dylib Tk"
("package ifneeded Tk 8.5.16" script)
invoked from within
"package require Tk 8.0"
(file "/Users/chengrick/Desktop/bioimagesuite35/lib/iwidgets4.0.1/iwidgets.tcl" line 17)
invoked from within
"source /Users/chengrick/Desktop/bioimagesuite35/lib/iwidgets4.0.1/iwidgets.tcl"
("package ifneeded Iwidgets 4.0.1" script)
invoked from within
"package require Iwidgets "
(file "/Users/chengrick/Desktop/bioimagesuite35/main/bis.tcl" line 45)

Is there anything I miss?
Oct 3, 2017  02:10 PM | Xenophon Papademetris
RE:ErrorBioimageSuiteMac OS Sierra 10.12.6
You need to install XQuartz and launch it first.

Xenios
Oct 3, 2017  09:10 PM | Chun-yu Cheng
RE:ErrorBioimageSuiteMac OS Sierra 10.12.6
It works!!

Deeply appreciate your help and patience.

Chun
Oct 16, 2017  01:10 AM | Augustin Joessel
RE: Error BioimageSuite Mac OS Sierra
Hello, 

Just wanted to thank you for this version, I have a newer Mac and could not run the 3.0 version of BIS. 

When you say to be careful when using this version, what you we pay particular attention to?
Oct 20, 2017  08:10 AM | Xenophon Papademetris
RE: ErrorBioimageSuite Mac OS Sierra
It is a beta version as it has not been as tested as we would like - this is the usual disclaimer.