help > Crop a swc by selecting a region
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May 18, 2017 03:05 AM | wu han
Crop a swc by selecting a region
Is there a way to crop a swc file by selecting a region. Then save
this ROI to a new swc file? Thanks
May 18, 2017 03:05 AM | Hanchuan Peng
RE: Crop a swc by selecting a region
enter the neuron editing mode (right
clicking the neuron in a 3d viewer and choose from the pop-up
menu), then you can easily remove any parts you do not want by
paintbrush-type cut, or circling areas you do not need, ....
finally you save the remaining part to file.
Originally posted by wu han:
Originally posted by wu han:
Is there a way to crop a swc file by selecting a
region. Then save this ROI to a new swc file? Thanks
May 18, 2017 04:05 AM | wu han
RE: Crop a swc by selecting a region
Thank you very much for instruction. I follow you step and I can do
that by selecting a branch then delete that branch. But how can I
select a min (x y z) max (x y z) just like surface cut to choose a
region. Then save this region to a swc file. Thanks.
May 18, 2017 05:05 AM | Zhi Zhou
RE: Crop a swc by selecting a region
Instead of using "delete the nearest neuron-segment" option, please
try to use "delete multiple neuron-segments by a stroke". In this
mode, you can easily remove any segment by a stroke, or you can circle an area and hold "Shift" button at the
same time to delete all segments inside the circle. In this way, you can quickly remove all unwanted segments.
Here is one example video for your reference (https://www.dropbox.com/s/ujii6f1ehpnct9...).
Here is one example video for your reference (https://www.dropbox.com/s/ujii6f1ehpnct9...).
May 18, 2017 05:05 AM | Hanchuan Peng
RE: Crop a swc by selecting a region
you can write a simple plugin to do so
easily....
Originally posted by wu han:
Originally posted by wu han:
Thank you very much for instruction. I follow
you step and I can do that by selecting a branch then delete that
branch. But how can I select a min (x y z) max (x y z) just like
surface cut to choose a region. Then save this region to a swc
file. Thanks.
May 18, 2017 06:05 AM | wu han
RE: Crop a swc by selecting a region
Thanks for all reply. I know how to that now.