Hello,

I'm looking to automatise part of the multi-slice images generation and need the cmd command for saving the multi-slice views that I created.
Is there a command line for "Save as bitmap"?
If not, is there another option to do this using cmd or python?

Thanks,
Hadas

You can do this easily with MRIcroGL.
  https://www.nitrc.org/plugins/mwiki/inde...

You can see the PDF manual for details, but the relevant calls are MOSAIC and SAVEBMP. Optionally, you can use QUIT if you want MRIcroGL to terminate when it is done executing (I have commented it out below). The sample below shows a mosaic with "L"ables, "A"xial slices, 20% "H"orizontal slices, with two rows: the first row shows MNI coordinates -8, 0, 8, 16 while the second shows slices 24, 32, 40 and 50:
 

BEGIN
RESETDEFAULTS;
LOADIMAGE('mni152_2009bet');
OVERLAYLOAD('motor');
OVERLAYMINMAX(1, 2.6, 4);
MOSAIC('L + A H -0.100 -8 0 8 16; 24 32 40 50');
SAVEBMP('myimage');
//quit;
END.

This can be a solution, but I prefer doing it with MRIcron, since we already have a scrip for MRIcron.
Saving the pictures with MRIcroGL means re configuring everything with the new commands.

I was able to do most of the process with MRIcron (using: start /MAX mricron ANATOMY_IMAGE.nii -o FIRST_IMAGE.hdr -h -0.5 -c -7 -o SECOND_IMAGE.hdr -l 0.5 -c -8 -m .\multislice\axMotor.ini)  and I'M  only missing the "Save as" bitmap step. 
Is there a way to save as bitmap with MRIcron script?

Thank you,

Hadas