help > Teraconverter Segmentation Fault Issue
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Oct 5, 2017 12:10 AM | Maryana Alegro
Teraconverter Segmentation Fault Issue
Hi everyone,
Teraconverter (Linux, binary package version 1.10.5) causes a segmentation fault when I use it to create a bigtiff file. My dataset has a single 2D image comprised of 988 tiles, about 17Gb. I've notice that it only happens when I'm creating a TIFF file. I've noticed, using the --verbose flag, that it crashes during file saving. I'm successfully able to create Vaa3D raw files. Moreover, Teraconverter works with TIFF if I stitch small datasets (about 80 images). What makes me think it has to do with the use o Big TIFF. I'd really appreciate any suggestion on how to overcome this issue. The command line I used is:
teraconverter -s="xml_merging.xml" -d="../output" --sfmt="TIFF (unstitched, 3D)" --dfmt="TIFF (series, 2D)" --libtiff_bigtiff
Thank you!
Teraconverter (Linux, binary package version 1.10.5) causes a segmentation fault when I use it to create a bigtiff file. My dataset has a single 2D image comprised of 988 tiles, about 17Gb. I've notice that it only happens when I'm creating a TIFF file. I've noticed, using the --verbose flag, that it crashes during file saving. I'm successfully able to create Vaa3D raw files. Moreover, Teraconverter works with TIFF if I stitch small datasets (about 80 images). What makes me think it has to do with the use o Big TIFF. I'd really appreciate any suggestion on how to overcome this issue. The command line I used is:
teraconverter -s="xml_merging.xml" -d="../output" --sfmt="TIFF (unstitched, 3D)" --dfmt="TIFF (series, 2D)" --libtiff_bigtiff
Thank you!
Oct 5, 2017 09:10 PM | Hanchuan Peng
RE: Teraconverter Segmentation Fault Issue
well, I won't even use BigTIFF which
is pretty buggy here and there. The Vaa3D's raw file format is a
great option for saving files and for fast accessing....
-Hanchuan
Originally posted by Maryana Alegro:
-Hanchuan
Originally posted by Maryana Alegro:
Hi everyone,
Teraconverter (Linux, binary package version 1.10.5) causes a segmentation fault when I use it to create a bigtiff file. My dataset has a single 2D image comprised of 988 tiles, about 17Gb. I've notice that it only happens when I'm creating a TIFF file. I've noticed, using the --verbose flag, that it crashes during file saving. I'm successfully able to create Vaa3D raw files. Moreover, Teraconverter works with TIFF if I stitch small datasets (about 80 images). What makes me think it has to do with the use o Big TIFF. I'd really appreciate any suggestion on how to overcome this issue. The command line I used is:
teraconverter -s="xml_merging.xml" -d="../output" --sfmt="TIFF (unstitched, 3D)" --dfmt="TIFF (series, 2D)" --libtiff_bigtiff
Thank you!
Teraconverter (Linux, binary package version 1.10.5) causes a segmentation fault when I use it to create a bigtiff file. My dataset has a single 2D image comprised of 988 tiles, about 17Gb. I've notice that it only happens when I'm creating a TIFF file. I've noticed, using the --verbose flag, that it crashes during file saving. I'm successfully able to create Vaa3D raw files. Moreover, Teraconverter works with TIFF if I stitch small datasets (about 80 images). What makes me think it has to do with the use o Big TIFF. I'd really appreciate any suggestion on how to overcome this issue. The command line I used is:
teraconverter -s="xml_merging.xml" -d="../output" --sfmt="TIFF (unstitched, 3D)" --dfmt="TIFF (series, 2D)" --libtiff_bigtiff
Thank you!