sdm-help-list > SDM stopped running during Mean
Showing 1-4 of 4 posts
Dec 9, 2017 04:12 AM | he zhen
SDM stopped running during Mean
Dear all,
I was in trouble using SDM.
After finishing the Preprocessing, a warning message is displayed. Than, the software stopped running during the calculation of the Mean. I hope all the experts and scholars can help me.
Best wishes for all,
HeZhen
1.The following is the Log content:
_________________________________________________________
Launching Preprocessing...
Launched: sdm pp gray matter, 1, 20, gray matter, 1
Analyzing coordinates
Creating anisotropic space
Preprocessing studies
Preprocessing Monte Carlo permutation
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Removing p
WARNING: Compressed file 'pp_(null).nii.gz' not found.
WARNING: Compressed file 'MyMean_z.nii.gz' not found. revious permutations
Calling web browser
Pre-processing finished!
_________________________________________________________
Launching Mean...
Saving
2.The following is content of Batch listing:
# Preprocess the studies ('gray matter', anisotropy = 1, isotropic FWHM = 20mm, mask = ' gray matter', 1 randomizations):
pp gray matter, 1, 20, gray matter, 1
# Calculate the mean of all studies as MyMean
MyMean = mean 0
I was in trouble using SDM.
After finishing the Preprocessing, a warning message is displayed. Than, the software stopped running during the calculation of the Mean. I hope all the experts and scholars can help me.
Best wishes for all,
HeZhen
1.The following is the Log content:
_________________________________________________________
Launching Preprocessing...
Launched: sdm pp gray matter, 1, 20, gray matter, 1
Analyzing coordinates
Creating anisotropic space
Preprocessing studies
Preprocessing Monte Carlo permutation
WARNING: Compressed file 'pp_(null).nii.gz' not found.
Removing p
WARNING: Compressed file 'pp_(null).nii.gz' not found.
WARNING: Compressed file 'MyMean_z.nii.gz' not found. revious permutations
Calling web browser
Pre-processing finished!
_________________________________________________________
Launching Mean...
Saving
2.The following is content of Batch listing:
# Preprocess the studies ('gray matter', anisotropy = 1, isotropic FWHM = 20mm, mask = ' gray matter', 1 randomizations):
pp gray matter, 1, 20, gray matter, 1
# Calculate the mean of all studies as MyMean
MyMean = mean 0
Dec 14, 2017 07:12 AM | Anton Albajes-Eizagirre - FIDMAG - Germanes Hospitalaries
RE: SDM stopped running during Mean
Dear HeZen,
Could you please paste here the contents of the execution log (Tools -> View Execution Log)
Thanks,
Anton
Could you please paste here the contents of the execution log (Tools -> View Execution Log)
Thanks,
Anton
Dec 15, 2017 01:12 AM | he zhen
RE: SDM stopped running during Mean
aAnalyzing coordinates
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aCreating anisotropic space
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aPreprocessing studies
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aPreprocessing Monte Carlo permutation 1 of 1
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aRemoving previous permutations
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aCalling web browser to display the report
o
d
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_start 1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_rand 1,1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_end 1,gray_matter,1.000000,20.000000,gray_matter
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aSaving probabilities
WARNING: Compressed file 'MyMean_z.nii.gz' not found.
The program will close as this problem could cause fatal errors.
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" lm_start 0,MyMean,,,,,
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" lm_end 0,MyMean,,,,,
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.
.
.
.
.
.
.
.
o
aCreating anisotropic space
.
.
.
.
.
.
.
.
.
.
.
.
.
o
aPreprocessing studies
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
o
aPreprocessing Monte Carlo permutation 1 of 1
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aRemoving previous permutations
o
aCalling web browser to display the report
o
d
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_start 1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_rand 1,1,gray_matter,1.000000,20.000000,gray_matter
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" pp_end 1,gray_matter,1.000000,20.000000,gray_matter
WARNING: Compressed file 'pp_(null).nii.gz' not found.
The program will close as this problem could cause fatal errors.
aSaving probabilities
WARNING: Compressed file 'MyMean_z.nii.gz' not found.
The program will close as this problem could cause fatal errors.
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" lm_start 0,MyMean,,,,,
About to execute: s_exec: "D:\MetaAnalysisTools\SDM\SdmGui-win64\bin\windows64/sdm_core" lm_end 0,MyMean,,,,,
Jan 21, 2018 06:01 PM | Anton Albajes-Eizagirre - FIDMAG - Germanes Hospitalaries
RE: SDM stopped running during Mean
Dear He Zen,
I am sorry about the late reply. Can you send us the sdm_table.txt file? Also, can you tell us which is the location of the study data? (the complete path to sdm_table.txt)
Best,
Anton
I am sorry about the late reply. Can you send us the sdm_table.txt file? Also, can you tell us which is the location of the study data? (the complete path to sdm_table.txt)
Best,
Anton