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Mar 20, 2018  12:03 PM | Grigorios Oikonomou - Caltech
Error message with FIJI GUI
Hi Torsten,

I am trying to run the FIJI GUI and I get the following error message. Any suggestions? 

Many thanks,
Grigorios

bindir is /Applications/Fiji.app/bin/cmtk
munger is /Applications/Fiji.app/bin/cmtk/munger
Jefferis, Potter 2007
Chosen reg params: Cachero, Ostrovsky 2010
/Users/grigoriosoikonomou/Documents/Prober_Lab/zBrain/registration/refbrain/Ref20131120pt14pl2.nrrd
refbrain/Ref20131120pt14pl2.nrrd
Cachero, Ostrovsky 2010
"/Applications/Fiji.app/bin/cmtk/munger" -b "/Applications/Fiji.app/bin/cmtk" -a -w -r 010203 -T 8 -X 52 -C 8 -G 80 -R 3 -A '--accuracy 0.4' -W '--accuracy 1.6' -T 4 -s "refbrain/Ref20131120pt14pl2.nrrd" images
[ERROR] null
Traceback (most recent call last):
File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in
File "CMTK_Registration/CMTK_Registration_GUI.py", line 211, in
File "__pyclasspath__/cmtkgui$py.class", line 95, in makescript
UnicodeEncodeError: 'ascii' codec can't encode character u'\u2018' in position 229: ordinal not in range(128)

at org.python.core.codecs.strict_errors(codecs.java:208)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:497)
at org.python.core.JavaFunc.__call__(Py.java:2426)
at org.python.core.PyObject.__call__(PyObject.java:431)
at org.python.core.codecs.encoding_error(codecs.java:1538)
at org.python.core.codecs.PyUnicode_EncodeIntLimited(codecs.java:1211)
at org.python.core.codecs.PyUnicode_EncodeASCII(codecs.java:1170)
at org.python.core.codecs.encode(codecs.java:165)
at org.python.core.PyString.encode(PyString.java:3896)
at org.python.core.PyFile.asWritable(PyFile.java:494)
at org.python.core.PyFile.file_write(PyFile.java:454)
at org.python.core.PyFile$file_write_exposer.__call__(Unknown Source)
at org.python.core.PyObject.__call__(PyObject.java:465)
at cmtkgui$py.makescript$7(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py:98)
at cmtkgui$py.call_function(/Applications/Fiji.app/plugins/CMTK_Registration/cmtkgui.py)
at org.python.core.PyTableCode.call(PyTableCode.java:167)
at org.python.core.PyBaseCode.call(PyBaseCode.java:307)
at org.python.core.PyFunction.function___call__(PyFunction.java:471)
at org.python.core.PyFunction.__call__(PyFunction.java:466)
at org.python.pycode._pyx7.f$0(CMTK_Registration/CMTK_Registration_GUI.py:219)
at org.python.pycode._pyx7.call_function(CMTK_Registration/CMTK_Registration_GUI.py)
at org.python.core.PyTableCode.call(PyTableCode.java:167)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1386)
at org.python.core.__builtin__.eval(__builtin__.java:497)
at org.python.core.__builtin__.eval(__builtin__.java:501)
at org.python.util.PythonInterpreter.eval(PythonInterpreter.java:259)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:40)
at org.python.jsr223.PyScriptEngine.eval(PyScriptEngine.java:31)
at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
at org.scijava.script.ScriptModule.run(ScriptModule.java:160)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:238)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Mar 20, 2018  01:03 PM | Grigorios Oikonomou - Caltech
RE: Error message with FIJI GUI
I am sorry to have bothered you; I think I have figured out what the issue was.

Many thanks!