open-discussion > resting state fMRI Philips
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Jul 28, 2018 07:07 PM | Aya Abdel Galeel - Alexandria faculty of medicine
resting state fMRI Philips
I did a resting state fMRI on my university Philips machine
"Ingenia", I had the sequence, It appears on my mac to be as a
single dcm file... how can I convert it to nifti to begin the
processing on FSL
Jul 28, 2018 09:07 PM | mehrnaz jenabi
resting state fMRI Philips
Sent from my iPhone
> On Jul 28, 2018, at 4:24 PM, Aya Abdel Galeel wrote:
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> On Jul 28, 2018, at 4:24 PM, Aya Abdel Galeel wrote:
>
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Jul 29, 2018 12:07 AM | Ahmed Radwan - KU Leuven
RE: resting state fMRI Philips
Hi Aya,
This is enhanced DICOM format, you can convert it with dcm2nii or dcm2niix.
This is enhanced DICOM format, you can convert it with dcm2nii or dcm2niix.
Jul 29, 2018 05:07 AM | Aya Abdel Galeel - Alexandria faculty of medicine
RE: resting state fMRI Philips
Hi Dear Dr. Ahmed
I downloaded dcmnii and tried the simple trial of draging this dcm file and drop it at dcmnii window but no response
hope you r fine
I downloaded dcmnii and tried the simple trial of draging this dcm file and drop it at dcmnii window but no response
hope you r fine
Jul 29, 2018 01:07 PM | Ahmed Radwan - KU Leuven
RE: resting state fMRI Philips
Hi Aya,
Try converting it with dcm2niix, provided with MRICROGL (https://www.nitrc.org/projects/mricrogl/).
Can you open that dicom file with a dicom viewer ? (I would try that to make sure the data was exported fine to begin with).
Good luck :)
Try converting it with dcm2niix, provided with MRICROGL (https://www.nitrc.org/projects/mricrogl/).
Can you open that dicom file with a dicom viewer ? (I would try that to make sure the data was exported fine to begin with).
Good luck :)
Jul 29, 2018 04:07 PM | Aya Abdel Galeel - Alexandria faculty of medicine
RE: resting state fMRI Philips
yes it opens via Osirix, on my mac but appears as one file, i tried
to download dcm2niix from MRIcroGL but it seems to e a windows
program not supported on apple...
do you recommend to download it on windows then transfer it to mac to complete the post processing???
thanks Ahmed for your support, waiting for next reply
do you recommend to download it on windows then transfer it to mac to complete the post processing???
thanks Ahmed for your support, waiting for next reply
Jul 29, 2018 06:07 PM | Ahmed Radwan - KU Leuven
RE: resting state fMRI Philips
Okay, you should download the whole MRICroGL for mac os x, install
and open, go to import, convert DICOM to NIFTI, then MRICroGL (top
left of screen), DICOM to NIFTI, etc.
No need to go to Windows, this should work fine.
R
No need to go to Windows, this should work fine.
R
Jul 30, 2018 12:07 PM | Abdullah BAS - Ercıyes
RE: resting state fMRI Philips
-Hi,
First of all you should take a look to this link below ;
https://www.nitrc.org/plugins/mwiki/inde...
And after that u can find tutorials at this link below ;
https://www.youtube.com/watch?v=rv8pAIaR...
-Abdullah
First of all you should take a look to this link below ;
https://www.nitrc.org/plugins/mwiki/inde...
And after that u can find tutorials at this link below ;
https://www.youtube.com/watch?v=rv8pAIaR...
-Abdullah
Jul 30, 2018 12:07 PM | rmarquis - University of Geneva
RE: resting state fMRI Philips
Hi,
MRIcroGL is available for Windows, Mac and even Linux here: https://www.nitrc.org/frs/?group_id=889
Then you can directly use dcm2nii executable or access the DICOM conversion tool in the menu of MRIcroGL executable. Read the PDF manual for command line switches.
Best
MRIcroGL is available for Windows, Mac and even Linux here: https://www.nitrc.org/frs/?group_id=889
Then you can directly use dcm2nii executable or access the DICOM conversion tool in the menu of MRIcroGL executable. Read the PDF manual for command line switches.
Best